View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1269_low_12 (Length: 283)
Name: NF1269_low_12
Description: NF1269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1269_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 9630561 - 9630802
Alignment:
| Q |
13 |
gctgttgcagaactagcaaccattccatctatcccaaatggaaaatacctataattaaaacaggagataaatattattcaataacttgaagagacgaaag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||| |
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| T |
9630561 |
gctgttgcagaactagcaaccattccatctatcccaaatggaaaatacctataattaaaacaagatacaaatattattcaataacttgaagagacgaaaa |
9630660 |
T |
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| Q |
113 |
atagatgtagtagggatgtgttgaagaaagatgtagattacccttaccctttagggagttcatatccaatccatccagttttgaatcccaaataactacc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9630661 |
atagatgtagtagggatgtgttgaagaaagatgtagattacgcttaccctttagggagttcatatccaatccatccagttttgaatcccaaataaccacc |
9630760 |
T |
|
| Q |
213 |
agctactatgacaaacatcaaagcacatatattcattgatgt |
254 |
Q |
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| T |
9630761 |
agctactatgacaaacatcaaagcacatatattcattgatgt |
9630802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 9616014 - 9616255
Alignment:
| Q |
13 |
gctgttgcagaactagcaaccattccatctatcccaaatggaaaatacctataattaaaacaggagataaatattattcaataacttgaagagacgaaag |
112 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9616014 |
gctgttgcagaactagcaaccattccatttaccccaaatggaaaatacctataattaaaacaggagataaatattattcaataacttgaagagaccaaaa |
9616113 |
T |
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| Q |
113 |
atagatgtagtagggatgtgttgaagaaagatgtagattacccttaccctttagggagttcatatccaatccatccagttttgaatcccaaataactacc |
212 |
Q |
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| T |
9616114 |
atagatgcagtagggatgtgttgaagaaatatgtagattacccttaccctttaggaagttcatatccaatccatccagttttgaatcccaaataaccacc |
9616213 |
T |
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| Q |
213 |
agctactatgacaaacatcaaagcacatatattcattgatgt |
254 |
Q |
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| T |
9616214 |
agctactatgacaaacatcaaagcacatatattcattgatgt |
9616255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 9656714 - 9656939
Alignment:
| Q |
12 |
agctgttgcagaactagcaaccattccatctatcccaaatggaaaatacctataattaaaacaggagataaatattattcaataacttgaagagacgaaa |
111 |
Q |
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|||||||||||||| ||||||||||||||||| |||||| ||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||||| ||| |
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| T |
9656714 |
agctgttgcagaaccagcaaccattccatctaccccaaaaggaaaatacctattattaaaacaagagataaatattattcagtaacctgaagagaccaaa |
9656813 |
T |
|
| Q |
112 |
gatagatgtagtagggatgtgttgaagaaagatgtagattacccttaccctttagggagttcatatccaatccatccagttttgaatcccaaataactac |
211 |
Q |
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| T |
9656814 |
tatag----agtgggggt---------aaagatgta----aaagttaccctgttgggagtttatatccaatccatccagttttgaatcctaaataaccac |
9656896 |
T |
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| Q |
212 |
cagctactatgacaaacatcaaagcacatatattcattgatgt |
254 |
Q |
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| T |
9656897 |
cagctactatgataaacattaaagcacagatattcactgatgt |
9656939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 156 - 254
Target Start/End: Original strand, 9640551 - 9640649
Alignment:
| Q |
156 |
ttaccctttagggagttcatatccaatccatccagttttgaatcccaaataactaccagctactatgacaaacatcaaagcacatatattcattgatgt |
254 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| |||||| |
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| T |
9640551 |
ttaccctgtagggagtttatatccaatccatccagttttgaatcccaaataaccaccagctacgatgataaacatcaaagcacatatattcactgatgt |
9640649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 9640425 - 9640501
Alignment:
| Q |
12 |
agctgttgcagaactagcaaccattccatctatcccaaatggaaaatacctataattaaaacaggagataaatatta |
88 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||| || | |||||||| |
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| T |
9640425 |
agctgttgcagaaccagcaaccattccatctactccaaatgcaaaatacctattattaaaacaagatacaaatatta |
9640501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 254
Target Start/End: Complemental strand, 33643155 - 33643065
Alignment:
| Q |
164 |
tagggagttcatatccaatccatccagttttgaatcccaaataactaccagctactatgacaaacatcaaagcacatatattcattgatgt |
254 |
Q |
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|||| ||||||||||||| |||||||| |||||||||| |||| |||||||||||| ||||| | ||| ||||||| ||||| |||||| |
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| T |
33643155 |
taggaagttcatatccaacccatccagacttgaatcccatgtaaccaccagctactatcacaaaaagcaatgcacatacattcactgatgt |
33643065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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