View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1269_low_13 (Length: 271)
Name: NF1269_low_13
Description: NF1269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1269_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 56 - 240
Target Start/End: Complemental strand, 37812339 - 37812155
Alignment:
| Q |
56 |
caatgtactttccagcctctcatgactaaaaataaaaccctcgttttgcacatttcatcactttgttttatagtaatagcatcaattctttgaccattca |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37812339 |
caatgtactttccagcctctcatgactaaaaataaaatcctcgttttgcacatttcatcactttgttttatagtaatagcatcaattctttgaccattca |
37812240 |
T |
|
| Q |
156 |
cattccttccttattctcatgactacttatttatacacaccaacattctagctagttatatttcacatttgaaaatgggttctgt |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37812239 |
cattccttccttattctcatgactacttatttatacacaccaacattctagctagttatatttcacatttgaaaatgggttctgt |
37812155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 37820142 - 37820083
Alignment:
| Q |
181 |
cttatttatacacaccaacattctagctagttatatttcacatttgaaaatgggttctgt |
240 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37820142 |
cttatctatacactccaacattctagctagttatatttcacatttgaaaatgggttctgt |
37820083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University