View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1269_low_14 (Length: 265)
Name: NF1269_low_14
Description: NF1269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1269_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 39 - 217
Target Start/End: Original strand, 8863929 - 8864107
Alignment:
| Q |
39 |
aaaatttcaagcataagttatccatttcgattaaaagatgatccaatacactgcggagacagcaggtatgaactatcttgtgaaaataatgtgacaactt |
138 |
Q |
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| T |
8863929 |
aaaatttcaaacataagttatccatttcgattaaaagatgatccaattcattgcggggacagcaggtatgagctatcttgtgcaaataatgttacaactt |
8864028 |
T |
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| Q |
139 |
tatatttgtattcggggaaatatcttgtgcaatcaatcaactacaacgatttcacaatcagagttgttgatcctggagt |
217 |
Q |
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| T |
8864029 |
tatatttgtattcgggaaaatatcatgtgcaatccatcaactacaacaatttcacaatcagactggttgatcccggagt |
8864107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 39 - 225
Target Start/End: Original strand, 9072084 - 9072270
Alignment:
| Q |
39 |
aaaatttcaagcataagttatccatttcgattaaaagatgatccaatacactgcggagacagcaggtatgaactatcttgtgaaaataatgtgacaactt |
138 |
Q |
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| T |
9072084 |
aaaatttccaacataagttacccatttcgattacaagatgaccccaaacactgcggagaaagcaggtacgaactatcttgtgaaaataatgtggcaactt |
9072183 |
T |
|
| Q |
139 |
tatatttgtattcggggaaatatcttgtgcaatcaatcaactacaacgatttcacaatcagagttgttgatcctggagtcatagaat |
225 |
Q |
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| T |
9072184 |
tatatttgtattcgggaaaatattatgtgcaatccatcaactacaacaatttcacaatccgagttgctgatcctggagtcatagaat |
9072270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 8868165 - 8868323
Alignment:
| Q |
39 |
aaaatttcaagcataagttatccatttcgattaaaagatgatccaatacactgcggagacagcaggtatgaactatcttgtgaaaataatgtgacaactt |
138 |
Q |
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| T |
8868165 |
aaaatttcaaacataagttatccatttcgattaaaagatgatccaattcattgcggggatagcaggtatgaactatcttgtgaaaataacgtgacaacct |
8868264 |
T |
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| Q |
139 |
tatatttgtattcggggaaatatcttgtgcaatcaatcaactacaacgatttcacaatc |
197 |
Q |
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| T |
8868265 |
taaatttgtattccggaaaatattatgtgaaatccatcaactacaacaatttcataatc |
8868323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 51 - 217
Target Start/End: Complemental strand, 9065714 - 9065548
Alignment:
| Q |
51 |
ataagttatccatttcgattaaaagatgatccaatacactgcggagacagcaggtatgaactatcttgtgaaaataatgtgacaactttatatttgtatt |
150 |
Q |
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| T |
9065714 |
ataagttatccatttcgattaaaagatgatccaatacactgcggtaacagcaagtatgaactatcttgtgaaaataatgtgacaactttatatttgtact |
9065615 |
T |
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| Q |
151 |
cggggaaatatcttgtgcaatcaatcaactacaacgatttcacaatcagagttgttgatcctggagt |
217 |
Q |
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| |||||| ||| | || |||||||||||| |||| ||||||||| | |||||||||||||| |
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| T |
9065614 |
ccacaaaatataatgtccgttccatcaactacaacaattttacaatcagactggttgatcctggagt |
9065548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 39 - 215
Target Start/End: Complemental strand, 8972447 - 8972271
Alignment:
| Q |
39 |
aaaatttcaagcataagttatccatttcgattaaaagatgatccaatacactgcggagacagcaggtatgaactatcttgtgaaaataatgtgacaactt |
138 |
Q |
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||||||| || |||| ||||||||||||||||||||||||| |||| || || ||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
8972447 |
aaaattttaaacatatgttatccatttcgattaaaagatgacccaaaacgttgtggagacagcaggtatgaactagcttgtgaaaataatgtcacaactt |
8972348 |
T |
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| Q |
139 |
tatatttgtattcggggaaatatcttgtgcaatcaatcaactacaacgatttcacaatcagagttgttgatcctgga |
215 |
Q |
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||||||| ||||| | ||||||| ||| | || |||||||||||| ||||||||||| || | |||||||||||| |
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| T |
8972347 |
tatatttatattctgcaaaatatcatgtccggtcgatcaactacaacaatttcacaatccgattggttgatcctgga |
8972271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 213
Target Start/End: Original strand, 9099611 - 9099785
Alignment:
| Q |
39 |
aaaatttcaagcataagttatccatttcgattaaaagatgatccaatacactgcggagacagcaggtatgaactatcttgtgaaaataatgtgacaactt |
138 |
Q |
| |
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||||| |||| ||||||||| |||||||||||||||||||| |||| ||| ||||||||||||||||| |||||| ||||||||||||||||||||| | |
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| T |
9099611 |
aaaatatcaaacataagttacccatttcgattaaaagatgacccaaaacaatgcggagacagcaggtacgaactagcttgtgaaaataatgtgacaaaat |
9099710 |
T |
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| Q |
139 |
tatatttgtattcggggaaatatcttgtgcaatcaatcaactacaacgatttcacaatcagagttgttgatcctg |
213 |
Q |
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| T |
9099711 |
tatatttatactctgcaaaataccatgtccagtccatcaactacaataatttcacaatccgattagttgatcctg |
9099785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 63 - 217
Target Start/End: Original strand, 9136315 - 9136469
Alignment:
| Q |
63 |
tttcgattaaaagatgatccaatacactgcggagacagcaggtatgaactatcttgtgaaaataatgtgacaactttatatttgtattcggggaaatatc |
162 |
Q |
| |
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||||||||||||||||| |||| ||||||||| |||||||| ||||||||| |||||||||||||| | |||| ||||||||| || || | |||||| |
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| T |
9136315 |
tttcgattaaaagatgacccaaaacactgcggtgacagcagttatgaactagcttgtgaaaataatataacaagtttatatttatactctgcaaaatatt |
9136414 |
T |
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| Q |
163 |
ttgtgcaatcaatcaactacaacgatttcacaatcagagttgttgatcctggagt |
217 |
Q |
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|||||| || |||||||||||||||||||||||| || | |||||||||||||| |
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| T |
9136415 |
atgtgcagtccatcaactacaacgatttcacaatccgattggttgatcctggagt |
9136469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 217
Target Start/End: Complemental strand, 9007487 - 9007309
Alignment:
| Q |
39 |
aaaatttcaagcataagttatccatttcgattaaaagatgatccaatacactgcggagacagcaggtatgaactatcttgtgaaaataatgtgacaactt |
138 |
Q |
| |
|
|||||||| | ||||| ||| |||||||||||||| |||| ||||| | ||||| |||| ||||| ||| || | |||||||||||||||||||||| |
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| T |
9007487 |
aaaatttccaacataacttacccatttcgattaaataatgacccaattaattgcggggacaaaaggtacgaattagcatgtgaaaataatgtgacaactt |
9007388 |
T |
|
| Q |
139 |
tatatttgtattcggggaaatatcttgtgcaatcaatcaactacaacgatttcacaatcagagttgttgatcctggagt |
217 |
Q |
| |
|
|| |||||||||| || ||||||| ||||||||| |||||||||||| ||||||||||| || | ||||||| |||||| |
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| T |
9007387 |
taaatttgtattcaggaaaatatcatgtgcaatccatcaactacaacaatttcacaatccgattggttgatcttggagt |
9007309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 199
Target Start/End: Original strand, 9093253 - 9093413
Alignment:
| Q |
39 |
aaaatttcaagcataagttatccatttcgattaaaagatgatccaatacactgcggagacagcaggtatgaactatcttgtgaaaataatgtgacaactt |
138 |
Q |
| |
|
|||||||| | ||||| ||||||||||||| ||||| |||| ||||| || ||||| |||| || || || |||||||||||||||||||| ||||| |
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| T |
9093253 |
aaaatttccaacataacttatccatttcgactaaaaaatgacccaattcattgcgggaacagaagttacgagctatcttgtgaaaataatgtaacaacaa |
9093352 |
T |
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| Q |
139 |
tatatttgtattcggggaaatatcttgtgcaatcaatcaactacaacgatttcacaatcag |
199 |
Q |
| |
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|| ||||||| || | ||||| |||| | || |||||||||||| ||||||||||||| |
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| T |
9093353 |
taaatttgtactctgcaaaatacaatgtgaagtccatcaactacaacaatttcacaatcag |
9093413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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