View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1269_low_17 (Length: 257)

Name: NF1269_low_17
Description: NF1269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1269_low_17
NF1269_low_17
[»] chr1 (9 HSPs)
chr1 (36-219)||(11003331-11003508)
chr1 (51-217)||(11000366-11000532)
chr1 (51-141)||(11009082-11009172)
chr1 (48-129)||(11034495-11034576)
chr1 (49-147)||(10921610-10921708)
chr1 (55-146)||(10975113-10975204)
chr1 (55-141)||(10905207-10905293)
chr1 (48-138)||(10987980-10988070)
chr1 (48-138)||(11019148-11019238)


Alignment Details
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 36 - 219
Target Start/End: Original strand, 11003331 - 11003508
Alignment:
Q  36 taagcatggtggcaacaacaacatttcttgtacggatattcgtcgtatgatgttttatggatttgaactttcatggctcaatagtctttgtaaacatggt 135  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11003331 taagcatggtggaaacaacaacatttcttgtacggatattcatcgtatgatgttttatggatttgaactttcatggctcaatagtctttgtaaacatggt 11003430  T
Q  136 tggtattcagacatcctctattacaataaccaacgtcgtcgttgtgcacctttaggtaattttctccagacgacttcctcaaag 219  Q
    |||||||||||||||||| ||||||||||||||||||      ||||||||| ||||||||||||||| |||||||||||||||    
T  11003431 tggtattcagacatcctcgattacaataaccaacgtc------gtgcaccttcaggtaattttctccaaacgacttcctcaaag 11003508  T

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Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 51 - 217
Target Start/End: Original strand, 11000366 - 11000532
Alignment:
Q  51 caacaacatttcttgtacggatattcgtcgtatgatgttttatggatttgaactttcatggctcaatagtctttgtaaacatggttggtattcagacatc 150  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  11000366 caacaacattttttgcacggatattcgtcgtatgatgttttatggatttgaactttcatggctcaatagcctttgtaaacatggttggtattcagaaatc 11000465  T
Q  151 ctctattacaataaccaacgtcgtcgttgtgcacctttaggtaattttctccagacgacttcctcaa 217  Q
    ||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||    
T  11000466 ctcgattacaataaccaacgtcgtggttgtgcacgtttaggtaattttctccaaacgacttcctcaa 11000532  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 11009172 - 11009082
Alignment:
Q  51 caacaacatttcttgtacggatattcgtcgtatgatgttttatggatttgaactttcatggctcaatagtctttgtaaacatggttggtat 141  Q
    |||||||||||||||||| || |||||||||| ||||| |||||||||||||||||| |||||||| ||||  |||||||||||| |||||    
T  11009172 caacaacatttcttgtacagacattcgtcgtaggatgtattatggatttgaactttcttggctcaacagtcggtgtaaacatggtcggtat 11009082  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 11034576 - 11034495
Alignment:
Q  48 caacaacaacatttcttgtacggatattcgtcgtatgatgttttatggatttgaactttcatggctcaatagtctttgtaaa 129  Q
    ||||||||||||||||||  ||||||| ||||||  |||||||||||||||||||||||| |||||||| ||| ||||||||    
T  11034576 caacaacaacatttcttgcgcggatatccgtcgtgagatgttttatggatttgaactttcttggctcaacagtttttgtaaa 11034495  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 147
Target Start/End: Complemental strand, 10921708 - 10921610
Alignment:
Q  49 aacaacaacatttcttgtacggatattcgtcgtatgatgttttatggatttgaactttcatggctcaatagtctttgtaaacatggttggtattcagac 147  Q
    |||||||||||||| || || || || ||||||  ||| |||||||||||||||||||| |||||||| ||| |||||||| |||| |||||| |||||    
T  10921708 aacaacaacatttcatgcacagacatccgtcgtgagatcttttatggatttgaactttcttggctcaacagtttttgtaaagatggatggtatgcagac 10921610  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 10975204 - 10975113
Alignment:
Q  55 aacatttcttgtacggatattcgtcgtatgatgttttatggatttgaactttcatggctcaatagtctttgtaaacatggttggtattcaga 146  Q
    ||||||||||| | |||  | ||||||||||||| ||||||||||||| |||| |||||||||||| |||| || |||||| ||||| ||||    
T  10975204 aacatttcttgcaaggacttccgtcgtatgatgtattatggatttgaattttcttggctcaatagtatttgcaatcatggtcggtatgcaga 10975113  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 10905293 - 10905207
Alignment:
Q  55 aacatttcttgtacggatattcgtcgtatgatgttttatggatttgaactttcatggctcaatagtctttgtaaacatggttggtat 141  Q
    ||||||||||| | |||  | ||||||||||||| ||||||||||||| |||| |||||||||||| |||  || ||||||||||||    
T  10905293 aacatttcttgcaaggacttccgtcgtatgatgtattatggatttgaattttcttggctcaatagtatttacaatcatggttggtat 10905207  T

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Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 10988070 - 10987980
Alignment:
Q  48 caacaacaacatttcttgtacggatattcgtcgtatgatgttttatggatttgaactttcatggctcaatagtctttgtaaacatggttgg 138  Q
    |||||| ||||||||||| ||||| ||    |||||||||| ||||||||||||| | || ||||||||||||||||||||| ||| ||||    
T  10988070 caacaataacatttcttgcacggacatcaaccgtatgatgtcttatggatttgaagtctcttggctcaatagtctttgtaaagatgattgg 10987980  T

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Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 11019238 - 11019148
Alignment:
Q  48 caacaacaacatttcttgtacggatattcgtcgtatgatgttttatggatttgaactttcatggctcaatagtctttgtaaacatggttgg 138  Q
    |||||| ||||||||||| ||||| ||    |||||||||| ||||||||||||| | || ||||||||||||||||||||| ||| ||||    
T  11019238 caacaataacatttcttgcacggacatcaaccgtatgatgtcttatggatttgaagtctcttggctcaatagtctttgtaaagatgattgg 11019148  T

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