View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1269_low_2 (Length: 464)
Name: NF1269_low_2
Description: NF1269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1269_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 23 - 454
Target Start/End: Original strand, 41702072 - 41702502
Alignment:
| Q |
23 |
ggaggagcagagacaacacaaacacaagtatgcactagaccatgataccgttacattgtgtttttgacagcactttcccaaacacaagtacaagatacca |
122 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41702072 |
ggagcagcagagacaacacaaacacaagtatgcactagaccatgataccgttacattgtgtttttgacagcactttcccaaacacaagtacaagatacca |
41702171 |
T |
|
| Q |
123 |
ttccatattaggccagcaacattatcgatttttatcatttctctttagcatcattgattctcttgtgctattcagcttctgcaaacagctttgggataac |
222 |
Q |
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||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41702172 |
ttccatattaggccaacaacactatctatttt-atcatttctctttagcatcattgattctcttgtgctattcagcttctgcaaacagctttgggataac |
41702270 |
T |
|
| Q |
223 |
tgattctcttgtgctattccgcttctgcaaacagaagaaataaatagaagtatcaattgaatttttagcaaagtgtaagttgtaatagttctataattat |
322 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41702271 |
tgattctcttgtgttattcagcttctgcaaacagaagaaataaatagaagtatcaattgaatttttagcaaagcgtaagttgtaatagttctataattat |
41702370 |
T |
|
| Q |
323 |
caaagacaatacagtttgaggagtatgatataaaatagagaaacaaaaataccaaacagatgcataatagaatgacaatttattcaaaaactttcaatgt |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
41702371 |
caaagacaatacagtttgaggagtatgatataaaatagagaaacaaaaataccaaacagatgcacaatataatgacaatttattcaaaaactttcaatgt |
41702470 |
T |
|
| Q |
423 |
acacaatatgtgcaacaaactctttctctgtg |
454 |
Q |
| |
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|||||||||||||||||| ||||||||||||| |
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| T |
41702471 |
acacaatatgtgcaacaagctctttctctgtg |
41702502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 108 - 454
Target Start/End: Complemental strand, 54074692 - 54074347
Alignment:
| Q |
108 |
aagtacaagataccattccatattaggccagcaacattatcgatttttatcatttctctttagcatcattgattctcttgtgctattcagcttctgcaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54074692 |
aagtacaagataccattccatattaggccaacaacactatctatttt-atcatttctctttagcatcattgattctcttgtgctattcagcttctgcaaa |
54074594 |
T |
|
| Q |
208 |
cagctttgggataactgattctcttgtgctattccgcttctgcaaacagaagaaataaatagaagtatcaattgaatttttagcaaagtgtaagttgtaa |
307 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
54074593 |
cagctttgggataactgattctcttgtgttattcagcttctgcaaacagaagaaataaatagaagtatcaattgaatttttagcaaagcgtaagttgtaa |
54074494 |
T |
|
| Q |
308 |
tagttctataattatcaaagacaatacagtttgaggagtatgatataaaatagagaaacaaaaataccaaacagatgcataatagaatgacaatttattc |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
54074493 |
tagttctataattatcaaagacaatacagtttgaggagtatgatataaaatagagaaacaaaaataccaaacagatgcacaatataatgacaatttattc |
54074394 |
T |
|
| Q |
408 |
aaaaactttcaatgtacacaatatgtgcaacaaactctttctctgtg |
454 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
54074393 |
aaaaactttcaatgtacacaatatgtgcaacaagctctttctctgtg |
54074347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 54074878 - 54074693
Alignment:
| Q |
23 |
ggaggagcagagacaacacaaacacaagtatgcactagaccatgataccgttacattgtgtttttgacagcactttcccaaacacaagtacaagatacca |
122 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54074878 |
ggagcagcagagacaacacaaacacaagtatgcactagaccatgataccgttacattgtgtttttgacagcactttcccaaacacaagtacaagatacca |
54074779 |
T |
|
| Q |
123 |
ttccatattaggccagcaacattatcgatttttatcatttctctttagcatcattgattctcttgtgctattcagcttctgcaaaca |
209 |
Q |
| |
|
||||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54074778 |
ttccatattaggccaacaacactatcta-ttttatcatttctctttagcatcattgattctcttgtgctattcagcttctgcaaaca |
54074693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 306 - 448
Target Start/End: Original strand, 25649556 - 25649701
Alignment:
| Q |
306 |
aatagttctataattatcaaagacaat---acagtttgaggagtatgatataaaatagagaaacaaaaataccaaacagat-gcataatagaatgacaat |
401 |
Q |
| |
|
|||||||||||||||||| ||||||| | |||||||||||||| || ||||||||||||||||| |||||||||| || |||||||||||||| ||| |
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| T |
25649556 |
aatagttctataattatc-tagacaataaaatagtttgaggagtatcatgtaaaatagagaaacaaagataccaaacatatcgcataatagaatgataat |
25649654 |
T |
|
| Q |
402 |
ttattcaaaaactttcaatgtacacaatatgtgcaacaaactctttc |
448 |
Q |
| |
|
|||||||||| | | |||||||||||||||| ||||||||||||||| |
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|
| T |
25649655 |
ttattcaaaatcatccaatgtacacaatatgcgcaacaaactctttc |
25649701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 334 - 422
Target Start/End: Complemental strand, 19541751 - 19541663
Alignment:
| Q |
334 |
cagtttgaggagtatgatataaaatagagaaacaaaaataccaaacagatgcataatagaatgacaatttattcaaaaactttcaatgt |
422 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| ||||||| ||||||| |||| |||||||| ||||| |||| |||||||||| |
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| T |
19541751 |
cagtttgaggagtatcatataaaatagagaaacaaagataccaatgagatgcacaatacaatgacaagttatttaaaatctttcaatgt |
19541663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 54074725 - 54074693
Alignment:
| Q |
223 |
tgattctcttgtgctattccgcttctgcaaaca |
255 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
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| T |
54074725 |
tgattctcttgtgctattcagcttctgcaaaca |
54074693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 186 - 454
Target Start/End: Complemental strand, 21134968 - 21134699
Alignment:
| Q |
186 |
tgtgctattcagcttctgcaaacagctttgggataactgattctcttgtgctattccgcttctgcaaacagaagaaat-aaatagaagtatcaattgaat |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
21134968 |
tgtgctattcagcttctgcaaacagctttgggataactgattctcttgtgctattcagcttctgcaaacagaagaaattaaatagaagtatcaattgaat |
21134869 |
T |
|
| Q |
285 |
ttttagcaaagtgtaagttgtaatagttctataattatcaaagacaatacagtttgaggagtatgatataaaatagagaaacaaaaataccaaacagatg |
384 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21134868 |
ttttagcaaagggtaagttgtaatagttctataattatcaaagacaatacagtttgaggagtatgatataaaatagagaaacaaaaataccaaacagatg |
21134769 |
T |
|
| Q |
385 |
cataatagaatgacaatttattcaaaaactttcaatgtacacaatatgtgcaacaaactctttctctgtg |
454 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
21134768 |
cacaatataatgacaatttattcaaaaactttcaatgtacacaatatgtgcaacaagctctttctctgtg |
21134699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 21134931 - 21134898
Alignment:
| Q |
177 |
tgattctcttgtgctattcagcttctgcaaacag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
21134931 |
tgattctcttgtgctattcagcttctgcaaacag |
21134898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 23559806 - 23559926
Alignment:
| Q |
23 |
ggaggagcagagacaacacaaacacaagtatgcactagaccatgataccgttacattgtgtttttgacagcactttcccaaacacaagtacaagatacca |
122 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
23559806 |
ggagcagcagagacaacacaaacacaagtatgcactagaccatgataccgttacattgtgtttttgacaacactttcccaaacacaagtacaagatacca |
23559905 |
T |
|
| Q |
123 |
ttccatattaggccagcaaca |
143 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
23559906 |
ttccatattaggccagcaaca |
23559926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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