View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1269_low_22 (Length: 251)
Name: NF1269_low_22
Description: NF1269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1269_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 27125663 - 27125424
Alignment:
| Q |
1 |
tgaaaataatctaccaatacagtttgagcaatgtattgggtatgagacgcttttatgcaaattgaatgctgtcaaatgtgaatgaagccttctcattttg |
100 |
Q |
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| T |
27125663 |
tgaaaataatctcccaataaagtttgagcaatgtatttggtatgagttaattttattcaaattgaatgctgtcaaatgtgaatgaagtcttctcattttg |
27125564 |
T |
|
| Q |
101 |
ggatattaggatcaaataattaaactcctaccattgatttatttatttatagtttaaaccggtttatctttgtgcgtaagtacagagaccaattcctcaa |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||| ||||| | ||||||||||||| |||||||| || |||| ||||||| |||||||||| |
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| T |
27125563 |
ggatattaggatcaaataattaaattcctaccattgcttta--tattttttgtttaaaccggttaatctttgtacgcaagtgcagagactaattcctcaa |
27125466 |
T |
|
| Q |
201 |
actgtgtaggaccgccatagataataaagctctcagaataat |
242 |
Q |
| |
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||||||||||| | ||||||||||||||||| |||||||||| |
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| T |
27125465 |
actgtgtaggatcaccatagataataaagctttcagaataat |
27125424 |
T |
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