View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1269_low_24 (Length: 248)
Name: NF1269_low_24
Description: NF1269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1269_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 47717241 - 47717094
Alignment:
| Q |
1 |
ttcataataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctagaagcagtaattccaaaagagacagatggcaaagaaaaatgg |
100 |
Q |
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| T |
47717241 |
ttcataataataagttgtgatggttaacagagttttgcattcaaatagagacaacctagaagcagtaattccaaaagagacagatggcaaagaaaaatgg |
47717142 |
T |
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| Q |
101 |
aagccaatagttataagtattttgattttaaaaattagatattagcat |
148 |
Q |
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| T |
47717141 |
aagccaatagttataagtattttgattttaaaaattagatattagcat |
47717094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 47745033 - 47744929
Alignment:
| Q |
1 |
ttcataataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctagaagcagtaattccaaaagagacagatggcaaagaaaaatgg |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| |||| ||||||| ||||||||||||||| |
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| T |
47745033 |
ttcataataataagttgtgatggttaacaaagttttgcattcaaaaagagaaaacctagatgcagtaattcaaaaatagacagaaggcaaagaaaaatgg |
47744934 |
T |
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| Q |
101 |
aagcc |
105 |
Q |
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||||| |
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| T |
47744933 |
aagcc |
47744929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 148
Target Start/End: Complemental strand, 47712498 - 47712356
Alignment:
| Q |
4 |
ataataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctagaagcagtaattccaaaagagacagat-ggcaaagaaaaatggaa |
102 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||| |||| ||| | | || ||||||||||||| |
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| T |
47712498 |
ataataataagttgtgatggttaaca---ttttgcattcaaatagagaaaacctagatgcaataattcaaaaatagaaaaaaagggaaagaaaaatggac |
47712402 |
T |
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| Q |
103 |
gccaatagttataagtattttgattttaaaaattagatattagcat |
148 |
Q |
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| T |
47712401 |
gccaatagtcataagtttttttattttaaaaattagatattagcat |
47712356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 47713966 - 47713816
Alignment:
| Q |
1 |
ttcataataataagttgtg--atggttaacagagttttgcattcaaatagagaaaacctagaagcagtaat---------tccaaaagagacagatggca |
89 |
Q |
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||||||||||||||||||| ||| |||||| || |||| |||||||| | |||||||||| |||||||| || |||| ||| ||| || | |
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| T |
47713966 |
ttcataataataagttgtgtgatgattaacaaagcgttgctttcaaatataaaaaacctagatgcagtaatagtaataattcaaaaatagaaagaaggga |
47713867 |
T |
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| Q |
90 |
aagaaaaatggaagccaatagttataagtattttgattttaaaaattagat |
140 |
Q |
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| T |
47713866 |
aagaaaaatgcaagccattagtcataagtgttttgattataaaaattagat |
47713816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 47759350 - 47759276
Alignment:
| Q |
1 |
ttcataataataagttgtgatggttaacagagttttgcattcaaatagagaaaacctagaagcagtaattccaaaa |
76 |
Q |
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||||||||| |||||||| |||||||||| ||||||||||||||||| | |||| ||||| | |||||||| |||| |
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| T |
47759350 |
ttcataatattaagttgtaatggttaacaaagttttgcattcaaata-aaaaaaactagatgtagtaattcaaaaa |
47759276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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