View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1269_low_3 (Length: 401)

Name: NF1269_low_3
Description: NF1269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1269_low_3
NF1269_low_3
[»] chr1 (87 HSPs)
chr1 (112-400)||(11891837-11892125)
chr1 (112-384)||(11905448-11905720)
chr1 (118-393)||(11882657-11882932)
chr1 (112-356)||(52818440-52818684)
chr1 (112-236)||(11882603-11882727)
chr1 (112-236)||(11882363-11882487)
chr1 (112-339)||(11882411-11882638)
chr1 (112-236)||(11891597-11891721)
chr1 (112-339)||(11891645-11891872)
chr1 (110-242)||(52818842-52818974)
chr1 (112-339)||(11905256-11905483)
chr1 (112-221)||(11882315-11882424)
chr1 (112-221)||(11891549-11891658)
chr1 (112-233)||(11905208-11905329)
chr1 (112-267)||(52818769-52818924)
chr1 (112-218)||(11902554-11902660)
chr1 (184-333)||(11880174-11880323)
chr1 (118-339)||(11902512-11902733)
chr1 (112-233)||(52818755-52818876)
chr1 (139-333)||(11879793-11879987)
chr1 (139-333)||(11880033-11880227)
chr1 (184-333)||(11902674-11902823)
chr1 (139-218)||(11902677-11902756)
chr1 (277-339)||(11882384-11882446)
chr1 (277-339)||(11891618-11891680)
chr1 (133-218)||(11879622-11879707)
chr1 (112-333)||(52818799-52819020)
chr1 (184-332)||(11902770-11902918)
chr1 (139-218)||(11880177-11880256)
chr1 (166-233)||(11882321-11882388)
chr1 (145-236)||(11882588-11882679)
chr1 (166-233)||(11891555-11891622)
chr1 (145-236)||(11891822-11891913)
chr1 (110-333)||(11905158-11905381)
chr1 (145-236)||(11905433-11905524)
chr1 (112-218)||(11880054-11880160)
chr1 (283-333)||(11888193-11888243)
chr1 (283-333)||(11888241-11888291)
chr1 (283-333)||(11888289-11888339)
chr1 (283-333)||(11888337-11888387)
chr1 (283-333)||(11888385-11888435)
chr1 (283-333)||(11888433-11888483)
chr1 (283-333)||(11888481-11888531)
chr1 (283-333)||(11888529-11888579)
chr1 (283-333)||(11888577-11888627)
chr1 (283-333)||(11888625-11888675)
chr1 (283-333)||(11888673-11888723)
chr1 (283-333)||(11888721-11888771)
chr1 (283-333)||(11888769-11888819)
chr1 (283-333)||(11888817-11888867)
chr1 (283-333)||(11888865-11888915)
chr1 (283-333)||(11888913-11888963)
chr1 (283-333)||(11888961-11889011)
chr1 (283-333)||(11889009-11889059)
chr1 (283-333)||(11889057-11889107)
chr1 (283-333)||(11889105-11889155)
chr1 (283-333)||(11889153-11889203)
chr1 (283-333)||(11889201-11889251)
chr1 (283-333)||(11889249-11889299)
chr1 (283-333)||(11889297-11889347)
chr1 (283-333)||(11889345-11889395)
chr1 (283-333)||(11889393-11889443)
chr1 (283-333)||(11889441-11889491)
chr1 (283-333)||(11889489-11889539)
chr1 (169-227)||(52819097-52819155)
chr1 (139-209)||(52821086-52821156)
chr1 (133-242)||(11902314-11902423)
chr1 (110-230)||(11889556-11889676)
chr1 (110-194)||(52819082-52819166)
chr1 (133-197)||(52821338-52821402)
chr1 (139-230)||(11879937-11880028)
chr1 (112-230)||(11879553-11879671)
chr1 (112-218)||(11879814-11879920)
chr1 (118-236)||(11879964-11880082)
chr1 (277-339)||(11882336-11882398)
chr1 (277-339)||(11891570-11891632)
chr1 (112-209)||(11879649-11879746)
chr1 (134-171)||(11881461-11881498)
chr1 (280-333)||(11889630-11889683)
chr1 (134-171)||(11890827-11890864)
chr1 (139-236)||(11902485-11902582)
chr1 (139-236)||(52821347-52821444)
chr1 (283-323)||(11889537-11889577)
chr1 (283-339)||(11889777-11889833)
chr1 (112-224)||(11904920-11905032)
chr1 (142-218)||(52820933-52821009)
chr1 (112-236)||(52821395-52821519)
[»] scaffold1918 (4 HSPs)
scaffold1918 (110-233)||(19-142)
scaffold1918 (112-213)||(285-386)
scaffold1918 (145-209)||(91-155)
scaffold1918 (145-215)||(448-518)
[»] chr4 (1 HSPs)
chr4 (193-237)||(24482211-24482255)


Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 87)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 112 - 400
Target Start/End: Original strand, 11891837 - 11892125
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11891837 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 11891936  T
Q  212 catctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctccctactactacaaatcccctccaccaccatc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11891937 catctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctcccaactactacaaatcccctccaccaccatc 11892036  T
Q  312 gccatctcctccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagcttacacctatgctactccac 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  11892037 gccatctcctccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagcttacatctatgcttctccac 11892125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 112 - 384
Target Start/End: Original strand, 11905448 - 11905720
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  11905448 ccaccatcaccatcaccaccccctccctactattacaaatcacctccaccaccgtcaccatcaccgccacctccttactattacaaatctcccccacctc 11905547  T
Q  212 catctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctccctactactacaaatcccctccaccaccatc 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  11905548 catctccatctccaccacctccttatcactatcaaagtcctcctccaccatctcccatttctcatcctccctactactacaaatcccctccaccaccgtc 11905647  T
Q  312 gccatctcctccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagcttac 384  Q
     ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||    
T  11905648 tccatctcctccacctccgtaccattacgtgagtcctcccccaccagtaaagtctcctccaccatcagtttac 11905720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 118 - 393
Target Start/End: Original strand, 11882657 - 11882932
Alignment:
Q  118 tcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctccatctc 217  Q
    |||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11882657 tcaccatcaccgccacctccttactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctccatctc 11882756  T
Q  218 catctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctccctactactacaaatcccctccaccaccatcgccatc 317  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  11882757 catctccaccacctccttaccactatcaaagtcctcctccaccatctcccatttctcatcctccctactactacaaatcccctccaccaccatcgccgtc 11882856  T
Q  318 tcctccacctccataccattacgtgagtcctcccccaccagtaaagtcacctccaccaccagcttacacctatgct 393  Q
    |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |||| | |||||||    
T  11882857 tcctccacctccttaccactatgtgagtcctcccccaccagtaaagtcacctccaccaccaacttatatctatgct 11882932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 112 - 356
Target Start/End: Complemental strand, 52818684 - 52818440
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    |||||||| || || ||||| ||||||||||| ||||||||||||||||| || || || ||||| |||||||||||||||||||| || || |||||||    
T  52818684 ccaccatcgccttctccaccacctccctactactacaaatcacctccaccaccatccccgtcacctccacctccttactattacaagtcacctccacctc 52818585  T
Q  212 catctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctccctactactacaaatcccctccaccaccatc 311  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | ||||| |||||||| ||||||||||||||||||||||| |    
T  52818584 catctccatctccaccacctccttattactatcaaagtcctcctccaccatctcccactcctcatactccctaccactacaaatcccctccaccaccaac 52818485  T
Q  312 gccatctcctccacctccataccattacgtgagtcctcccccacc 356  Q
    | | |||||||||||||| |||||||| |||||||| ||||||||    
T  52818484 ggcgtctcctccacctccttaccattatgtgagtccccccccacc 52818440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 11882603 - 11882727
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  11882603 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatcacctccacctc 11882702  T
Q  212 catctccatctccaccacctcctta 236  Q
    | || ||||| || |||||||||||    
T  11882703 cctcaccatcaccgccacctcctta 11882727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 11882363 - 11882487
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||| || ||||| ||||||||||||||||| ||||| |    
T  11882363 ccaccatcaccatcaccaccacctccctactattacaaatcacctccaccaccatcaccatcacctccccctccatactattacaaatctcctccaccac 11882462  T
Q  212 catctccatctccaccacctcctta 236  Q
    |||| ||||| ||||||||||||||    
T  11882463 catcaccatcaccaccacctcctta 11882487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 112 - 339
Target Start/End: Original strand, 11882411 - 11882638
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    |||||||||||||| || |||||||| |||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||||| || ||||| |    
T  11882411 ccaccatcaccatcacctccccctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccttactattacaaatcacctccaccac 11882510  T
Q  212 catctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttct-catcctccctactactacaaatcccctccaccaccat 310  Q
    |||| ||||| ||||||||||| ||  ||||  ||||||| ||||| ||||||||   | || ||||| || || ||||||||||| || ||||||||||    
T  11882511 catccccatcaccaccacctccatactactacaaaagtccccctccaccatctccatctcctccatcc-ccatattactacaaatctccaccaccaccat 11882609  T
Q  311 cgccatctcctccacctccataccattac 339  Q
    | ||||| || || ||||| ||| |||||    
T  11882610 caccatccccaccccctccctactattac 11882638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 11891597 - 11891721
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||||||| || ||||| ||||||||||||||||| ||||| |    
T  11891597 ccaccatcaccatcaccaccacctccctactattacaaatcacctccaccaccatcaccatcacctccccctccatactattacaaatctcctccaccac 11891696  T
Q  212 catctccatctccaccacctcctta 236  Q
    |||| ||||| ||||||||||||||    
T  11891697 catcaccatcaccaccacctcctta 11891721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 112 - 339
Target Start/End: Original strand, 11891645 - 11891872
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    |||||||||||||| || |||||||| |||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||||| || ||||| |    
T  11891645 ccaccatcaccatcacctccccctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccttactattacaaatcacctccaccac 11891744  T
Q  212 catctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttct-catcctccctactactacaaatcccctccaccaccat 310  Q
    |||| ||||| ||||||||||| ||  ||||  ||||||| ||||| ||||||||   | || ||||| || || ||||||||||| || ||||||||||    
T  11891745 catccccatcaccaccacctccatactactacaaaagtccccctccaccatctccatctcctccatcc-ccatattactacaaatctccaccaccaccat 11891843  T
Q  311 cgccatctcctccacctccataccattac 339  Q
    | ||||| || || ||||| ||| |||||    
T  11891844 caccatccccaccccctccctactattac 11891872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 110 - 242
Target Start/End: Complemental strand, 52818974 - 52818842
Alignment:
Q  110 ctccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacc 209  Q
    ||||||||||||||||||| |||||||| |||||||| ||||| |||||||| ||||||||||| || || || || ||||||||| |||| || |||||    
T  52818974 ctccaccatcaccatcccctccccctccatactattataaatctcctccaccaccctcaccatccccacctccaccgtactattaccaatcccctccacc 52818875  T
Q  210 tccatctccatctccaccacctccttatcacta 242  Q
     ||||| ||||||||||||||||||||| ||||    
T  52818874 accatcaccatctccaccacctccttattacta 52818842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 112 - 339
Target Start/End: Original strand, 11905256 - 11905483
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    |||||||| ||||| ||||  | ||||||||||||||||||||||||||| || || |||||||| |||||||| |||||||||||||| || ||||| |    
T  11905256 ccaccatccccatcaccacaacatccctactattacaaatcacctccaccaccatcgccatcaccaccacctccctactattacaaatcacctccaccac 11905355  T
Q  212 catctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctccctactactacaaatcccctccaccaccatc 311  Q
    |||| ||||| || |||||||| ||  ||||  |||| || ||||| || ||||||  | ||| ||| || || ||||||||||| || |||||||||||    
T  11905356 catcaccatcgcctccacctccatactactacaaaagcccccctccaccttctccctctcctcctcccccatattactacaaatctccaccaccaccatc 11905455  T
Q  312 gccatctcctccacctccataccattac 339  Q
     ||||| || || ||||| ||| |||||    
T  11905456 accatcaccaccccctccctactattac 11905483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 11882315 - 11882424
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    ||||||||||||||||| |||||||| |||||||||||||| |||||||| || ||||||||||| |||||||| |||||||||||||| || ||||| |    
T  11882315 ccaccatcaccatcccctccccctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccctactattacaaatcacctccaccac 11882414  T
Q  212 catctccatc 221  Q
    |||| |||||    
T  11882415 catcaccatc 11882424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 11891549 - 11891658
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    ||||||||||||||||| |||||||| |||||||||||||| |||||||| || ||||||||||| |||||||| |||||||||||||| || ||||| |    
T  11891549 ccaccatcaccatcccctccccctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccctactattacaaatcacctccaccac 11891648  T
Q  212 catctccatc 221  Q
    |||| |||||    
T  11891649 catcaccatc 11891658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 112 - 233
Target Start/End: Original strand, 11905208 - 11905329
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    ||||||||||||||||| |||||||| || ||||||||||| |||||||| || || |||||||| | || ||| |||||||||||||| || ||||| |    
T  11905208 ccaccatcaccatcccctccccctccatattattacaaatctcctccaccaccatccccatcaccacaacatccctactattacaaatcacctccaccac 11905307  T
Q  212 catctccatctccaccacctcc 233  Q
    |||| ||||| |||||||||||    
T  11905308 catcgccatcaccaccacctcc 11905329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 52818924 - 52818769
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    ||||| |||||||||||||| || || ||||||||| |||| |||||||| || |||||||| || ||||||||||| || |||||||| || ||||| |    
T  52818924 ccaccctcaccatccccacctccaccgtactattaccaatcccctccaccaccatcaccatctccaccacctccttattactacaaatcacctccaccac 52818825  T
Q  212 catctccatctccaccacctccttatcactatcaaagtcctcctcccccatctccc 267  Q
    || | ||||| || |||||||| ||  ||||  ||||||| ||||| || ||||||    
T  52818824 caaccccatcacctccacctccatactactacaaaagtccccctccaccctctccc 52818769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 11902554 - 11902660
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    ||||| ||||| || |||||||| || ||||||||||| || |||||||| || |||||||| || ||||| || ||||||||||||||||| || ||||    
T  11902554 ccaccctcaccctctccacccccaccttactattacaagtctcctccaccaccttcaccatctcctccaccaccatactattacaaatctcctcctcctc 11902653  T
Q  212 catctcc 218  Q
    |||||||    
T  11902654 catctcc 11902660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 184 - 333
Target Start/End: Original strand, 11880174 - 11880323
Alignment:
Q  184 ccttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctccct 283  Q
    |||||||||||||||||||||||||| || || |||||||| ||||| || ||  ||||  ||  ||||||||| |||||||| ||| | | | | || |    
T  11880174 ccttactattacaaatctcccccaccaccttcaccatctcctccaccaccatactactacaaatctcctcctcctccatctcctattccccgtacacctt 11880273  T
Q  284 actactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    |||| |||||||| || |||||||| || |||||||||||||| ||||||    
T  11880274 actattacaaatctcccccaccaccttcaccatctcctccaccaccatac 11880323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 118 - 339
Target Start/End: Original strand, 11902512 - 11902733
Alignment:
Q  118 tcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctccatctc 217  Q
    |||||||| || || || || ||||| || ||||| || ||||| |||||||| || || || || |||||||||||||| ||||| ||||| || || |    
T  11902512 tcaccatctcctccaccaccatactactataaatctcccccaccaccctcaccctctccacccccaccttactattacaagtctcctccaccaccttcac 11902611  T
Q  218 catctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctccctactactacaaatcccctccaccaccatcgccatc 317  Q
    ||||||| ||||| || ||  | ||  ||  ||||||||| |||||||| ||| | ||| | || ||||| |||||||| || |||||||| || |||||    
T  11902612 catctcctccaccaccatactattacaaatctcctcctcctccatctcctattccccatacaccttactattacaaatctcccccaccaccttcaccatc 11902711  T
Q  318 tcctccacctccataccattac 339  Q
    ||||||||| |||||| |||||    
T  11902712 tcctccaccaccatactattac 11902733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 112 - 233
Target Start/End: Complemental strand, 52818876 - 52818755
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    |||||||||||||| ||||| ||||| || || ||||||||||||||||| ||  | |||||||| |||||||| ||||| ||||||  |||||| || |    
T  52818876 ccaccatcaccatctccaccacctccttattactacaaatcacctccaccaccaaccccatcacctccacctccatactactacaaaagtccccctccac 52818777  T
Q  212 catctccatctccaccacctcc 233  Q
    | ||||| ||||| ||||||||    
T  52818776 cctctccctctcctccacctcc 52818755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 333
Target Start/End: Original strand, 11879793 - 11879987
Alignment:
Q  139 tactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctccatctccatctccaccacctccttatc 238  Q
    ||||||||||| || || ||||| || |||||||| || ||||| || ||||| ||||||||||||||||| || || || ||||| ||||| || ||      
T  11879793 tactattacaagtccccaccaccaccttcaccatctcctccaccaccatactactacaaatctcccccacccccttcaccgtctcctccaccaccatact 11879892  T
Q  239 actatcaaagtcctcctcccccatctcccatttctcatcctccctactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||  ||  ||||||||| |||||||| ||| |  |  | || |||||||||||||| || ||||| || || |||||||||||||| ||||||    
T  11879893 actacaaatctcctcctcctccatctcctattcccaaaacaccttactactacaaatctcccccacccccttcaccatctcctccaccaccatac 11879987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 333
Target Start/End: Original strand, 11880033 - 11880227
Alignment:
Q  139 tactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctccatctccatctccaccacctccttatc 238  Q
    ||||| || ||||| || ||||| || ||||| || || ||||| |||||||||||||| ||||| || || || || |||||||| ||||| || ||      
T  11880033 tactactataaatctcccccaccaccgtcaccctctccaccaccaccttactattacaagtctcctcccccaccttcaccatctcctccaccaccatact 11880132  T
Q  239 actatcaaagtcctcctcccccatctcccatttctcatcctccctactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||  ||  ||||||||| |||||||| ||| | ||| | || ||||| |||||||| || |||||||| || |||||||||||||| ||||||    
T  11880133 actacaaatctcctcctcctccatctcctattccccatacaccttactattacaaatctcccccaccaccttcaccatctcctccaccaccatac 11880227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 333
Target Start/End: Original strand, 11902674 - 11902823
Alignment:
Q  184 ccttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctccct 283  Q
    |||||||||||||||||||||||||| || || |||||||| ||||| || ||  | ||  ||  ||||||||| |||||||| ||| | | | | || |    
T  11902674 ccttactattacaaatctcccccaccaccttcaccatctcctccaccaccatactattacaaatctcctcctcctccatctcctattccccgtacacctt 11902773  T
Q  284 actactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    |||| |||||||| || |||||||| || |||||||||||||| ||||||    
T  11902774 actattacaaatctcccccaccaccttcaccatctcctccaccaccatac 11902823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 11902677 - 11902756
Alignment:
Q  139 tactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctccatctcc 218  Q
    |||||||||||||| || ||||| || |||||||| || ||||| || ||||||||||||||||| || |||||||||||    
T  11902677 tactattacaaatctcccccaccaccttcaccatctcctccaccaccatactattacaaatctcctcctcctccatctcc 11902756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 339
Target Start/End: Original strand, 11882384 - 11882446
Alignment:
Q  277 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 339  Q
    ||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||||||| |||||    
T  11882384 cctccctactattacaaatcacctccaccaccatcaccatcacctccccctccatactattac 11882446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 339
Target Start/End: Original strand, 11891618 - 11891680
Alignment:
Q  277 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 339  Q
    ||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||||||| |||||    
T  11891618 cctccctactattacaaatcacctccaccaccatcaccatcacctccccctccatactattac 11891680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 11879622 - 11879707
Alignment:
Q  133 cctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctccatctcc 218  Q
    ||||| ||||| |||||||| |||||||| |||||||| || || ||||| || ||||||||||| ||||| ||||| ||||||||    
T  11879622 cctccttactactacaaatctcctccaccaccctcaccttccccaccaccaccatactattacaagtctcctccaccaccatctcc 11879707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 333
Target Start/End: Complemental strand, 52819020 - 52818799
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    ||||||||||||||||| || || || |||||||| || ||||| || || || |||||||| || || ||||| |||||||| |||||||| ||||| |    
T  52819020 ccaccatcaccatcccctcctccaccatactattataagtcaccacctccaccatcaccatcccctccccctccatactattataaatctcctccaccac 52818921  T
Q  212 catctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctccctactactacaaatcccctccaccaccatc 311  Q
    | || ||||| ||||| || || ||  | || |||   ||||| || ||||| ||   | | |  ||||| || ||||||||||| |||||||||||| |    
T  52818920 cctcaccatccccacctccaccgtactattaccaatcccctccaccaccatcaccatctccaccacctccttattactacaaatcacctccaccaccaac 52818821  T
Q  312 gccatctcctccacctccatac 333  Q
     ||||| |||||||||||||||    
T  52818820 cccatcacctccacctccatac 52818799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 184 - 332
Target Start/End: Original strand, 11902770 - 11902918
Alignment:
Q  184 ccttactattacaaatctcccccacctccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctccct 283  Q
    |||||||||||||||||||||||||| || || |||||||| ||||| || ||  ||||  ||   |||||||  |||||||||||| | ||| | || |    
T  11902770 ccttactattacaaatctcccccaccaccttcaccatctcctccaccaccatactactacaaatcccctcctcatccatctcccattccccatacacctt 11902869  T
Q  284 actactacaaatcccctccaccaccatcgccatctcctccacctccata 332  Q
    |||| |||| ||| || |||||||| || || ||||||||||| |||||    
T  11902870 actattacacatctcccccaccaccttcaccgtctcctccaccaccata 11902918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 218
Target Start/End: Original strand, 11880177 - 11880256
Alignment:
Q  139 tactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctccatctcc 218  Q
    |||||||||||||| || ||||| || |||||||| || ||||| || ||||| ||||||||||| || |||||||||||    
T  11880177 tactattacaaatctcccccaccaccttcaccatctcctccaccaccatactactacaaatctcctcctcctccatctcc 11880256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 11882321 - 11882388
Alignment:
Q  166 tcaccatcaccgccacctccttactattacaaatctcccccacctccatctccatctccaccacctcc 233  Q
    |||||||| || || ||||| ||||||||||||||||| ||||| ||||| ||||| |||||||||||    
T  11882321 tcaccatcccctccccctccatactattacaaatctcctccaccaccatcaccatcaccaccacctcc 11882388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 11882588 - 11882679
Alignment:
Q  145 tacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctccatctccatctccaccacctcctta 236  Q
    |||||||| || ||||| || |||||||| || || ||||| |||||||||||||| || |||||||| || ||||| || |||||||||||    
T  11882588 tacaaatctccaccaccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctcctta 11882679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 11891555 - 11891622
Alignment:
Q  166 tcaccatcaccgccacctccttactattacaaatctcccccacctccatctccatctccaccacctcc 233  Q
    |||||||| || || ||||| ||||||||||||||||| ||||| ||||| ||||| |||||||||||    
T  11891555 tcaccatcccctccccctccatactattacaaatctcctccaccaccatcaccatcaccaccacctcc 11891622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 11891822 - 11891913
Alignment:
Q  145 tacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctccatctccatctccaccacctcctta 236  Q
    |||||||| || ||||| || |||||||| || || ||||| |||||||||||||| || |||||||| || ||||| || |||||||||||    
T  11891822 tacaaatctccaccaccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctcctta 11891913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 333
Target Start/End: Original strand, 11905158 - 11905381
Alignment:
Q  110 ctccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacc 209  Q
    ||||||| |||||| | ||||| || || |||||||| || ||||| || || || |||||||| || || ||||| || |||||||||||||| |||||    
T  11905158 ctccaccgtcaccagctccaccaccaccttactattataagtcaccacccccaccatcaccatcccctccccctccatattattacaaatctcctccacc 11905257  T
Q  210 tccatctccatctccaccacctccttatcactatcaaagtcctcctcccccatctcccatttctcatcctccctactactacaaatcccctccaccacca 309  Q
     ||||| ||||| |||| || ||| ||  | ||  ||   ||||| || ||||| ||     | |  ||||||||||| |||||||| ||||||||||||    
T  11905258 accatccccatcaccacaacatccctactattacaaatcacctccaccaccatcgccatcaccaccacctccctactattacaaatcacctccaccacca 11905357  T
Q  310 tcgccatctcctccacctccatac 333  Q
    || ||||| |||||||||||||||    
T  11905358 tcaccatcgcctccacctccatac 11905381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 11905433 - 11905524
Alignment:
Q  145 tacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctccatctccatctccaccacctcctta 236  Q
    |||||||| || ||||| || ||||||||||| || ||||| |||||||||||||| || ||||| || || ||||| || |||||||||||    
T  11905433 tacaaatctccaccaccaccatcaccatcaccaccccctccctactattacaaatcacctccaccaccgtcaccatcaccgccacctcctta 11905524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 11880054 - 11880160
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    ||||| ||||| || ||||| || || ||||||||||| || ||||| || || |||||||| || ||||| || ||||| ||||||||||| || ||||    
T  11880054 ccaccgtcaccctctccaccaccaccttactattacaagtctcctcccccaccttcaccatctcctccaccaccatactactacaaatctcctcctcctc 11880153  T
Q  212 catctcc 218  Q
    |||||||    
T  11880154 catctcc 11880160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11888193 - 11888243
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888193 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11888241 - 11888291
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888241 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11888289 - 11888339
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888289 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11888337 - 11888387
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888337 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11888385 - 11888435
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888385 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11888433 - 11888483
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888433 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11888481 - 11888531
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888481 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11888529 - 11888579
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888529 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11888577 - 11888627
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888577 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11888625 - 11888675
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888625 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11888673 - 11888723
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888673 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11888721 - 11888771
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888721 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11888769 - 11888819
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888769 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11888817 - 11888867
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888817 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11888865 - 11888915
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888865 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11888913 - 11888963
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888913 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11888963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11888961 - 11889011
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11888961 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11889009 - 11889059
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889009 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11889057 - 11889107
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889057 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11889105 - 11889155
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889105 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11889153 - 11889203
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889153 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11889201 - 11889251
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889201 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11889249 - 11889299
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889249 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11889297 - 11889347
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889297 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #61
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11889345 - 11889395
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889345 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #62
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11889393 - 11889443
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889393 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #63
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11889441 - 11889491
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889441 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #64
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 333
Target Start/End: Original strand, 11889489 - 11889539
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||||||||| || ||||||||||| ||||||||||| ||||||    
T  11889489 tactactacaaatccccacctccaccatcgccttctcctccaccaccatac 11889539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #65
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 52819155 - 52819097
Alignment:
Q  169 ccatcaccgccacctccttactattacaaatctcccccacctccatctccatctccacc 227  Q
    |||||||| || ||||| ||||||||||||||||||||||| ||||| ||||| |||||    
T  52819155 ccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacc 52819097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #66
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 52821156 - 52821086
Alignment:
Q  139 tactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacc 209  Q
    ||||| ||||| || |||||||| ||||| || ||||| |||||||||||||| ||||| |||||||||||    
T  52821156 tactactacaagtctcctccaccaccctctccctcacctccacctccttactactacaagtctcccccacc 52821086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #67
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 242
Target Start/End: Original strand, 11902314 - 11902423
Alignment:
Q  133 cctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctccatctccatctccaccacctc 232  Q
    ||||| ||||| || ||||| |||||||| |||||||| || || || || || ||||||||||| ||||| ||||| |||||||| || ||||| ||||    
T  11902314 cctccttactactataaatcgcctccaccaccctcaccttcccctcccccaccatactattacaagtctcctccaccaccatctccctcaccacctcctc 11902413  T
Q  233 cttatcacta 242  Q
    | ||| ||||    
T  11902414 catattacta 11902423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #68
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 11889556 - 11889676
Alignment:
Q  110 ctccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacc 209  Q
    |||||||||| || || || ||||| || |||||||||||||| || || || || |||||||| || ||||| || ||||| || ||||| ||||||||    
T  11889556 ctccaccatcgccttctcctcccccaccttactattacaaatccccaccgccaccttcaccatctcccccaccaccctactactataaatcacccccacc 11889655  T
Q  210 tccatctccatctccaccacc 230  Q
     || || |||||||| |||||    
T  11889656 accttcaccatctcctccacc 11889676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #69
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 52819166 - 52819082
Alignment:
Q  110 ctccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactatta 194  Q
    |||||||||| ||||| || |||||||| |||||||||||||| || ||||| || |||||||| || || || || ||||||||    
T  52819166 ctccaccatccccatcacctccccctccatactattacaaatctcccccaccgccatcaccatccccacctccaccatactatta 52819082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #70
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 52821402 - 52821338
Alignment:
Q  133 cctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaa 197  Q
    ||||| ||||| ||||| ||||||||||| ||||| || ||||| |||||||||||||| |||||    
T  52821402 cctccttactactacaagtcacctccaccaccctctccctcacctccacctccttactactacaa 52821338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #71
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 11879937 - 11880028
Alignment:
Q  139 tactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctccatctccatctccaccacc 230  Q
    ||||| |||||||| || ||||| || |||||||| || ||||| || ||||| ||||||||||||||||| || || || ||||| |||||    
T  11879937 tactactacaaatctcccccacccccttcaccatctcctccaccaccatactactacaaatctcccccacccccttcaccgtctcctccacc 11880028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #72
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 11879553 - 11879671
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    ||||| ||||| |||||||| || || ||||| |||||    |||||||| || || || ||||| |||||||||||||| ||||||||||| ||||| |    
T  11879553 ccaccctcaccttccccaccaccaccatactactacaagagtcctccaccaccttctccttcacctccacctccttactactacaaatctcctccaccac 11879652  T
Q  212 catctccatctccaccacc 230  Q
    | || || || ||||||||    
T  11879653 cctcaccttccccaccacc 11879671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #73
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 11879814 - 11879920
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    ||||| |||||||| || || || || ||||| |||||||| || ||||| || ||||| || || ||||| || ||||| ||||||||||| || ||||    
T  11879814 ccaccttcaccatctcctccaccaccatactactacaaatctcccccacccccttcaccgtctcctccaccaccatactactacaaatctcctcctcctc 11879913  T
Q  212 catctcc 218  Q
    |||||||    
T  11879914 catctcc 11879920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #74
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 11879964 - 11880082
Alignment:
Q  118 tcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctccatctc 217  Q
    |||||||| || || || || ||||| |||||||| || ||||| || ||||| || || ||||| || ||||| || |||||||||||||| || || |    
T  11879964 tcaccatctcctccaccaccatactactacaaatctcccccacccccttcaccgtctcctccaccaccatactactataaatctcccccaccaccgtcac 11880063  T
Q  218 catctccaccacctcctta 236  Q
    | ||||||||||| |||||    
T  11880064 cctctccaccaccacctta 11880082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #75
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 339
Target Start/End: Original strand, 11882336 - 11882398
Alignment:
Q  277 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 339  Q
    ||||| ||||| |||||||| |||||||||||||| ||||| || |||||||| ||| |||||    
T  11882336 cctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccctactattac 11882398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #76
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 339
Target Start/End: Original strand, 11891570 - 11891632
Alignment:
Q  277 cctccctactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 339  Q
    ||||| ||||| |||||||| |||||||||||||| ||||| || |||||||| ||| |||||    
T  11891570 cctccatactattacaaatctcctccaccaccatcaccatcaccaccacctccctactattac 11891632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #77
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 11879649 - 11879746
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacc 209  Q
    ||||| ||||| |||||||| || || ||||||||||| || |||||||| || || || ||||| ||||| || || || ||||| |||||||||||    
T  11879649 ccaccctcaccttccccaccaccaccatactattacaagtctcctccaccaccatctccctcacctccaccaccatattactacaagtctcccccacc 11879746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #78
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 11881461 - 11881498
Alignment:
Q  134 ctccctactattacaaatcacctccacctccctcacca 171  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  11881461 ctccttactactacaaatcacctccacctccctcacca 11881498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #79
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 333
Target Start/End: Original strand, 11889630 - 11889683
Alignment:
Q  280 ccctactactacaaatcccctccaccaccatcgccatctcctccacctccatac 333  Q
    ||||||||||| ||||| || |||||||| || |||||||||||||| ||||||    
T  11889630 ccctactactataaatcacccccaccaccttcaccatctcctccaccaccatac 11889683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #80
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 11890827 - 11890864
Alignment:
Q  134 ctccctactattacaaatcacctccacctccctcacca 171  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  11890827 ctccttactactacaaatcacctccacctccctcacca 11890864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #81
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 11902485 - 11902582
Alignment:
Q  139 tactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctccatctccatctccaccacctcctta 236  Q
    ||||||||||| || || ||||| || |||||||| || ||||| || ||||| || |||||||||||||| || || || |||||||| || |||||    
T  11902485 tactattacaagtccccaccacccccttcaccatctcctccaccaccatactactataaatctcccccaccaccctcaccctctccacccccacctta 11902582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #82
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 52821444 - 52821347
Alignment:
Q  139 tactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctccatctccatctccaccacctcctta 236  Q
    ||||| ||||| || || ||||| ||||| || ||||| |||||||||||||| ||||| || || ||||| || ||||| || || |||||||||||    
T  52821444 tactactacaagtccccaccaccaccctctccctcacctccacctccttactactacaagtcacctccaccaccctctccctcacctccacctcctta 52821347  T

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Target: chr1; HSP #83
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 11889537 - 11889577
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctcc 323  Q
    ||||||||||||||||| || ||||||||||| ||||||||    
T  11889537 tactactacaaatccccacctccaccatcgccttctcctcc 11889577  T

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Target: chr1; HSP #84
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 11889777 - 11889833
Alignment:
Q  283 tactactacaaatcccctccaccaccatcgccatctcctccacctccataccattac 339  Q
    ||||| ||||| ||||| |||||||| || |||||||||||||| |||||| |||||    
T  11889777 tactattacaagtccccaccaccaccttcaccatctcctccaccaccatactattac 11889833  T

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Target: chr1; HSP #85
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 11904920 - 11905032
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    |||||||| ||||| || || || || ||||||||||| || || || || || |||||||| || ||||| || ||||||||||| || || || || |    
T  11904920 ccaccatccccatcacctcctccaccatactattacaagtccccccctccaccatcaccatctccaccaccaccatactattacaagtcaccacctccac 11905019  T
Q  212 catctccatctcc 224  Q
    |||||||||||||    
T  11905020 catctccatctcc 11905032  T

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Target: chr1; HSP #86
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 52821009 - 52820933
Alignment:
Q  142 tattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctccatctcc 218  Q
    ||||| ||||| |||||||| || |||||||| || ||||| || || |||||||| ||||| || |||||||||||    
T  52821009 tattataaatctcctccaccaccttcaccatctcctccaccaccctattattacaagtctcctcctcctccatctcc 52820933  T

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Target: chr1; HSP #87
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 52821519 - 52821395
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    |||||||| || || || || ||||| ||||| || ||||| || ||||| ||||| || ||||| ||||| |||||||| ||||| || || ||||| |    
T  52821519 ccaccatctccctcacccccacctccttactactataaatctccaccaccaccctctccctcacctccaccaccttactactacaagtccccaccaccac 52821420  T
Q  212 catctccatctccaccacctcctta 236  Q
    | ||||| || || |||||||||||    
T  52821419 cctctccctcacctccacctcctta 52821395  T

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Target: scaffold1918 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: scaffold1918
Description:

Target: scaffold1918; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 110 - 233
Target Start/End: Complemental strand, 142 - 19
Alignment:
Q  110 ctccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacc 209  Q
    |||| ||||| ||||| || || ||||| || ||||||||||| || ||||| |||||||  || || ||||| |||||||||||||||||||| |||||    
T  142 ctcctccatccccatcacctccacctccttattattacaaatcccccccacccccctcacattcccctccaccaccttactattacaaatctccaccacc 43  T
Q  210 tccatctccatctccaccacctcc 233  Q
     |||||||| || || ||||||||    
T  42 accatctccctcacctccacctcc 19  T

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Target: scaffold1918; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 386 - 285
Alignment:
Q  112 ccaccatcaccatccccaccccctccctactattacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctc 211  Q
    |||||||||||||| ||||| || || |||  |||||| ||||| || ||||||||||| ||||| |||||  |||||  |||||||||||| |||||||    
T  386 ccaccatcaccatcaccaccaccaccttacatttacaagtcaccaccgcctccctcaccgtcacctccaccatcttacatttacaaatctccaccacctc 287  T
Q  212 ca 213  Q
    ||    
T  286 ca 285  T

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Target: scaffold1918; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 155 - 91
Alignment:
Q  145 tacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacc 209  Q
    ||||| ||||| || ||||| || |||||||| ||||||||||| ||||||||||| ||||||||    
T  155 tacaagtcaccacctcctccatccccatcacctccacctccttattattacaaatcccccccacc 91  T

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Target: scaffold1918; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 518 - 448
Alignment:
Q  145 tacaaatcacctccacctccctcaccatcaccgccacctccttactattacaaatctcccccacctccatc 215  Q
    ||||| ||||| |||||||| ||||||||||| ||||| ||||||  |||||| || || |||||||||||    
T  518 tacaagtcacccccacctccatcaccatcacctccaccaccttacatttacaagtcaccaccacctccatc 448  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 24482255 - 24482211
Alignment:
Q  193 tacaaatctcccccacctccatctccatctccaccacctccttat 237  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||||    
T  24482255 tacaaatctccaccaccaccatctccatcaccaccacctccttat 24482211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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