View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1269_low_4 (Length: 398)
Name: NF1269_low_4
Description: NF1269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1269_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 391
Target Start/End: Complemental strand, 26956048 - 26955666
Alignment:
| Q |
16 |
atgggtggtccaactccaaataagttaagagctgaaaaaagtatatattgttcaatatgcttttggactaatggatcttacaaatgaactaagaaatgga |
115 |
Q |
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| T |
26956048 |
atgggtggtccaactccaaataagttaagagctgaaaaaagtatatattgttcaatatgcttttggactaatggatcttacaaatgaactaagaaatgga |
26955949 |
T |
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| Q |
116 |
aaacttaggatcttaagaatatccatttcc-------tccaattttctagtttggcagtaacatgtggagctggtcaggggatcaggttgccacagagag |
208 |
Q |
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| T |
26955948 |
aaacttaggatcttaagaatatccatttcccatttcctccaattttctagtttggcagtaacatgtggtgctggtcaggggatcaggttaccacagagag |
26955849 |
T |
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| Q |
209 |
atttcatggtccttgttgttttgcttggctacttgtctgtttggcttttgctaacaaattgaatgaaccaaaatatttgtatggattgagattattcctt |
308 |
Q |
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| T |
26955848 |
atttcatggtccttgttgttttgcttggctacttgtctgtttggcttttgctaacaaattgaatgaaccaaaaattttgtatggatcaagattattcctt |
26955749 |
T |
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| Q |
309 |
gcatgggaatttatgtacgatgtttctgtggttgcaaactcgttgtttgtcccttactaggactactgatgttgactttggtg |
391 |
Q |
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| T |
26955748 |
gtatgggaatttatgtacgatgtttctgtggttgcaaacttgatgtttgtcccttactagtactactgatgtcgacattggtg |
26955666 |
T |
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