View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1269_low_6 (Length: 346)
Name: NF1269_low_6
Description: NF1269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1269_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 51418409 - 51418674
Alignment:
| Q |
11 |
catagggaaagcactgaacaacgtgatggtgaagcaccatgaagcactcacgtgccgtccacgtgatgctgatatgtatttcatttcaccgttggagtat |
110 |
Q |
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| T |
51418409 |
catagggaaagcactgaacaacgtgatggtgaagcaccatgaagcactcacgtgccgtccacgtgatgctgatatgtattttatttcaccgttggagtat |
51418508 |
T |
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| Q |
111 |
cagttcagctgtagcagcagtccaccgcgtctctctcgtggtgtaaacagtagtaggaggaagctattatctccggttgcagaacgcagtcgccggcaaa |
210 |
Q |
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| T |
51418509 |
cagttcagctgtagcagcagtccaccgcgtctctctcgtggtgcaaacagtagtaggaggaagctattatctccggtggcagaacgcagtcgccggcaaa |
51418608 |
T |
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| Q |
211 |
tgagggtgtattatggaaccagaaatgaagggaggcgcgtgaagatgacgaaaagggagacggttg |
276 |
Q |
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| T |
51418609 |
tgagggtgtattatggaaccagaaatgaagggaggcgcgtgaagatgacgaaaagggagacggttg |
51418674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 51413356 - 51413534
Alignment:
| Q |
11 |
catagggaaagcactgaacaacgtgatggtgaagcaccatgaagcactcacgtgccgtccacgtgatgctgatatgtatttcatttcaccgttggagtat |
110 |
Q |
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| T |
51413356 |
catagggaaagcattgaacagcgtgatggtgaagcaccatgaagcactcacgtgccgaccacgtgatgctgatatgtatttcatttcaccgttggagtat |
51413455 |
T |
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| Q |
111 |
cagttcagctgtagcagcagtccaccgcgtctctctc---gtggtgtaaacagtagtaggaggaagctattatctccgg |
186 |
Q |
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| T |
51413456 |
cagttcagctgtagtagcagtccacctcgtctctctcgcggtggcgccagcagtagtaggaggaagcttttgtctccgg |
51413534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 81 - 186
Target Start/End: Original strand, 51416472 - 51416581
Alignment:
| Q |
81 |
gatatgtatttcatttcaccgttggagtatcagttcagctgtagcagcagtccaccgcgtctctctcg----tggtgtaaacagtagtaggaggaagcta |
176 |
Q |
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| T |
51416472 |
gatatgtatttcgtttcaccgttggaatatcagttcagctgtagcagcaatccaccgcatctcactcgtgcatggtgcaagcagcagtaggagaaagcta |
51416571 |
T |
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| Q |
177 |
ttatctccgg |
186 |
Q |
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|||||||||| |
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| T |
51416572 |
ttatctccgg |
51416581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 261
Target Start/End: Original strand, 51416582 - 51416639
Alignment:
| Q |
204 |
cggcaaatgagggtgtattatggaaccagaaatgaagggaggcgcgtgaagatgacga |
261 |
Q |
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| T |
51416582 |
cggtaaatgagggtatgtcgtggaaccagaaatgaatggaggcgcgtaaagatgacga |
51416639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 29323690 - 29323760
Alignment:
| Q |
42 |
aagcaccatgaagcactcacgtgccgtccacgtgatgctgatatgtatttcatttcaccgttggagtatca |
112 |
Q |
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| T |
29323690 |
aagcaccacgaagcactcatgtgccgtccacgtgatgctgatatgtatttcgtttcaccgttggagtatca |
29323760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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