View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1269_low_7 (Length: 329)
Name: NF1269_low_7
Description: NF1269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1269_low_7 |
 | |
|
| [»] chr7 (8 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 90 - 329
Target Start/End: Complemental strand, 8458881 - 8458642
Alignment:
| Q |
90 |
tcatttccaccaacttgaactcttggtggcttctttgttatatattgtcataaacaatcctcaaagacactgaatttgtaaagggattcaaaacatctcc |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8458881 |
tcatttccaccaacttgaactcttggtggcttctttgttatatattgtcataaacaatcctcaaagacactgaatttgtaaagggattcaaaacatctcc |
8458782 |
T |
|
| Q |
190 |
aattacaccacaaaccacaagaggagttaatgatttaatacgcataattaacaatgtatgctttctttttgttgcaaatataataatatgtgctttgata |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8458781 |
aattacaccacaaaccacaagaggagttaatgatttaatacgcataattaacaatgtatgctttctttttgttgcaaatataataatatgtgctttgata |
8458682 |
T |
|
| Q |
290 |
acttgctcattggctctactacatgcacatgcttttatat |
329 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8458681 |
acttgctcattggccctactacatgcacatgcttttatat |
8458642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 132 - 276
Target Start/End: Original strand, 776481 - 776625
Alignment:
| Q |
132 |
tattgtcataaacaatcctcaaagacactgaatttgtaaagggattcaaaacatctccaattacaccacaaaccacaagaggagttaatgatttaatacg |
231 |
Q |
| |
|
|||| |||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | | |||||||||||| |
|
|
| T |
776481 |
tattttcataaacgaccctcaaagacactgaatttgtaaagggatccaaaacatctccaattacaccacaaaccacaagagggttcattgatttaatacg |
776580 |
T |
|
| Q |
232 |
cataattaacaatgtatgctttctttttgttgcaaatataataat |
276 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| ||||||||||| |
|
|
| T |
776581 |
cataattaataatgtattttttctttttgttgctaatataataat |
776625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 132 - 253
Target Start/End: Original strand, 817763 - 817884
Alignment:
| Q |
132 |
tattgtcataaacaatcctcaaagacactgaatttgtaaagggattcaaaacatctccaattacaccacaaaccacaagaggagttaatgatttaatacg |
231 |
Q |
| |
|
||||||||||||| | ||||||||||||||| |||||||||| | |||||| |||||||||||||||| ||| ||||||||| || |||||||||||| |
|
|
| T |
817763 |
tattgtcataaacgactctcaaagacactgaacttgtaaaggggtccaaaacctctccaattacaccaccaacaacaagaggatttgttgatttaatacg |
817862 |
T |
|
| Q |
232 |
cataattaacaatgtatgcttt |
253 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
817863 |
cataattaataatgtatgcttt |
817884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 8459353 - 8459293
Alignment:
| Q |
13 |
atactcttaacgtttagtgattgaaatttcaggaaacaaaatgacaattgtttacaagatg |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8459353 |
atactcttaacgtttagtgattgaaatttcaggaaacaaaatgaaaattgtttacaagatg |
8459293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 817869 - 817928
Alignment:
| Q |
270 |
taataatatgtgctttgataacttgctcattggctctactacatgcacatgcttttatat |
329 |
Q |
| |
|
||||||| | ||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
817869 |
taataatgtatgctttgataatttgctcattggctctactacatgaccatgcttttatat |
817928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 776657 - 776706
Alignment:
| Q |
280 |
tgctttgataacttgctcattggctctactacatgcacatgcttttatat |
329 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
776657 |
tgctctgataacttgctcattggctctactacatgaccatgcttttatat |
776706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 775973 - 776023
Alignment:
| Q |
27 |
tagtgattgaaatttcaggaaacaaaatgacaattgtttacaagatgtgaa |
77 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||| | ||||||||| |
|
|
| T |
775973 |
tagttattgaaatttcaggaaacaaaattacaattgtttgctagatgtgaa |
776023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 118
Target Start/End: Original strand, 776402 - 776430
Alignment:
| Q |
90 |
tcatttccaccaacttgaactcttggtgg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
776402 |
tcatttccaccaacttgaactcttggtgg |
776430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University