View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1269_low_8 (Length: 324)
Name: NF1269_low_8
Description: NF1269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1269_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2577951 - 2577729
Alignment:
| Q |
1 |
ctataatttctctttcacatacaaaaattaattacattttttaatttatgtcaaagagtcaaaatgatttataatttgggacggacctttcctacatcta |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2577951 |
ctatgatttctctttcacatacaaaaattaattacattttttaatttatgtcaaataatcaaaatgatttataatttgggacggacctttcctacatcta |
2577852 |
T |
|
| Q |
101 |
catatagaattgaagagaaggaaattgttttaacacttcacatccctaccttgataaatgcaagcccaaccacttgaaaaccaaactccaaannnnnnng |
200 |
Q |
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| T |
2577851 |
cagatagaattgaagagaaggaaattgttttaacacttcacatccctaccttgataaatgcaagcccaaccacttgaaaaccaaactccaaatttttttg |
2577752 |
T |
|
| Q |
201 |
tctttggacaagatgcgaacaat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
2577751 |
tctttggacaagatgcgaacaat |
2577729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 2609166 - 2609076
Alignment:
| Q |
97 |
tctacatatagaattgaagagaaggaaattgttttaacacttcacatccctaccttgataaatgcaagcccaaccacttgaaaaccaaactc |
188 |
Q |
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|||||| |||||||||||| |||| ||||||||| ||||||||||||||||||| |||||||||||| | ||||||||||| | ||||||| |
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| T |
2609166 |
tctacagatagaattgaagtgaagcaaattgttt-aacacttcacatccctaccctgataaatgcaaatctaaccacttgaagagcaaactc |
2609076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 2611736 - 2611657
Alignment:
| Q |
4 |
taatttctctttcacatacaaaaattaattacatttttt-aatttatgtcaaagagtcaaaatgatttataatttgggacg |
83 |
Q |
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| T |
2611736 |
taatttttctttcacatacaaaa-ttaattacatttttttaatttgtgtgatagattcaacatgacttataatttgggacg |
2611657 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 7196808 - 7196882
Alignment:
| Q |
3 |
ataatttctctttcacatacaaaaattaattacattttttaatttatgtcaaagagtcaaaatgatttataatttg |
78 |
Q |
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||||||| ||||| ||||||||| |||||||||||| ||||||| ||| ||| |||||||||| |||||||||| |
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| T |
7196808 |
ataatttttctttatcatacaaaa-ttaattacatttcttaatttgtgtgaaatggtcaaaatgacttataatttg |
7196882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 16959076 - 16959031
Alignment:
| Q |
5 |
aatttctctttcacatacaaaaattaattacattttttaatttatgt |
51 |
Q |
| |
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||||||||| || ||||||||| |||||||||||||||||||||||| |
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| T |
16959076 |
aatttctctatctcatacaaaa-ttaattacattttttaatttatgt |
16959031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 5863992 - 5864048
Alignment:
| Q |
21 |
acaaaaattaattacattttttaatttatgtcaaagagtcaaaatgatttataattt |
77 |
Q |
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|||||||||||||| |||||| ||||||||| ||| ||||||| || ||||||||| |
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|
| T |
5863992 |
acaaaaattaattaaatttttaaatttatgtgaaattgtcaaaacgacttataattt |
5864048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 11259095 - 11259047
Alignment:
| Q |
28 |
ttaattacattttttaatttatgtcaaagagtcaaaatgatttataatt |
76 |
Q |
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|||||||||| ||||||||||||| ||| | ||||||||||||||||| |
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| T |
11259095 |
ttaattacatgttttaatttatgtaaaataaacaaaatgatttataatt |
11259047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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