View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270-Insertion-1 (Length: 471)
Name: NF1270-Insertion-1
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270-Insertion-1 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 8 - 471
Target Start/End: Original strand, 16946364 - 16946824
Alignment:
| Q |
8 |
ctattttcgtgaaatccaaacttctttcatggcttaggcactttgcatcctgacttaggttgttaagagtatttctatcagagagcttcaaaggcacctt |
107 |
Q |
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| T |
16946364 |
ctattttcgtgaaatccaaacttctttcatggcttaggcactttgcatcctgacttaggttgttaggagtatttctctcagagagcttcaaaggcacctt |
16946463 |
T |
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| Q |
108 |
tcctgaaactttaattgtttcacatgtagatgttcttgtcaaaattctattatttctctctttctcttgatctctactatttcgtactttgctattggac |
207 |
Q |
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| T |
16946464 |
tcctgaaacgttaattgtttcacatgtagatgttcttgtcaaaattctattatttctctctttctcttgatctctactatttcgtactttgctattggac |
16946563 |
T |
|
| Q |
208 |
tcgtcgtcttgatcttcatttcttgcatttgaatctgtttgtttgttcggtatatttttggtgctcgactccaattgcatggtgtccttaattttctctt |
307 |
Q |
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| T |
16946564 |
tcatcgtcttgatcttcatttcttgcatttgaatctgtttgtttgttcgggatatttttggtgctcaactccaattgcatggtgtccttaattttctct- |
16946662 |
T |
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| Q |
308 |
tattactttctccaatttgtactggaacctgttgcaagtttcttaccaaggtagcacttttcaacctttcttgtaagaaggctcttggctctgtgttcag |
407 |
Q |
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| T |
16946663 |
--ttactttctccaatttgtactggaacctgttgcaagtttcttaccaaggtagcacttttcaacctttcttgtaagaaggctcttggctctgtgttcag |
16946760 |
T |
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| Q |
408 |
tgacttatcttgttccaaatactgagtctcagaagaatctttcttttcaattggactcgcttga |
471 |
Q |
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| T |
16946761 |
tgacttatcttgttccaaatgctgagtctccgaagaatctttcttttcaattggactcgcttga |
16946824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 8 - 471
Target Start/End: Original strand, 17017029 - 17017489
Alignment:
| Q |
8 |
ctattttcgtgaaatccaaacttctttcatggcttaggcactttgcatcctgacttaggttgttaagagtatttctatcagagagcttcaaaggcacctt |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
17017029 |
ctattttcgtgaaatccaaacttctttcatggcttaggcactttgcatcctgacttaggttgttaggagtatttctctcagagagcttcaaaggcacctt |
17017128 |
T |
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| Q |
108 |
tcctgaaactttaattgtttcacatgtagatgttcttgtcaaaattctattatttctctctttctcttgatctctactatttcgtactttgctattggac |
207 |
Q |
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| T |
17017129 |
tcctgaaacgttaattgtttcacatgtagatgttcttgtcaaaattctattatttctctctttctcttgatctctactatttcgtactttgctattggac |
17017228 |
T |
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| Q |
208 |
tcgtcgtcttgatcttcatttcttgcatttgaatctgtttgtttgttcggtatatttttggtgctcgactccaattgcatggtgtccttaattttctctt |
307 |
Q |
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| T |
17017229 |
tcatcgtcttgatcttcatttcttgcatttgaatctgtttgtttgttcgggatatttttggtgctcaactccaattgcatggtgtccttaattttctct- |
17017327 |
T |
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| Q |
308 |
tattactttctccaatttgtactggaacctgttgcaagtttcttaccaaggtagcacttttcaacctttcttgtaagaaggctcttggctctgtgttcag |
407 |
Q |
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| T |
17017328 |
--ttactttctccaatttgtactggaacctgttgcaagtttcttaccaaggtagcacttttcaacctttcttgtaagaaggctcttggctctgtgttcag |
17017425 |
T |
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| Q |
408 |
tgacttatcttgttccaaatactgagtctcagaagaatctttcttttcaattggactcgcttga |
471 |
Q |
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| T |
17017426 |
tgacttatcttgttccaaatgctgagtctccgaagaatctttcttttcaattggactcgcttga |
17017489 |
T |
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