View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270-Insertion-2 (Length: 280)
Name: NF1270-Insertion-2
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 259
Target Start/End: Original strand, 6255963 - 6256218
Alignment:
| Q |
7 |
atgcttctcaaggaaatgtatatgtcagacaacaaacagagaataagaacttgaagaataagaaaa---aatagattttatgtgctactgtgtttgacag |
103 |
Q |
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| T |
6255963 |
atgcttctcaaggaaatttatatgtcagacaacaaacagagaatacgaacttgaagaataagaaaaaaaaatagattttatgtgctactgtgtttgacaa |
6256062 |
T |
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| Q |
104 |
cagtcctgtgcagagttgcagtttttctgtgatgccactgcagttgcggtttggtgttgtgtttgggaggcttgctagcgtgttttggagttgcttctgg |
203 |
Q |
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| T |
6256063 |
cagtcctatgcagagttgcagtttttcagtgatgccactgcagttgcggtttggtgttgtgtttgggaggcttgctagcgtgttttgaagttgcttctgg |
6256162 |
T |
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| Q |
204 |
ctggcttttattgctattttggtttctgttatgttaaggtagcaggtttccagggg |
259 |
Q |
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| T |
6256163 |
atagcttttattgctattttggtttctgttatgttaaggtagcaggtttccagggg |
6256218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 51207865 - 51207615
Alignment:
| Q |
7 |
atgcttctcaaggaaatgtatatgtcagacaacaaacagagaataagaacttgaagaataagaaaaaatagattttatgtgctactgtgtttgacagcag |
106 |
Q |
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| T |
51207865 |
atgcttctcaaggaaatttatatgctaga--acaaacagagaataagaacttgaagaataagaaaaaatagattttatgtgttgttgtgtttaacagcag |
51207768 |
T |
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| Q |
107 |
tcctgtgcagagttgcagtttttctgtgatgccactgcagttgcggtttggtgttgtgtttgggaggcttgctagcgtgttttggagttgcttctggctg |
206 |
Q |
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| T |
51207767 |
tcctgtgcaaagttgcagtttttctgtgatgccactgcagttgcggtttggtgttgtgtttgggaggccctctagcgtgttttggagttgcttctggctg |
51207668 |
T |
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| Q |
207 |
gcttttattgctattttggtttctgttatgttaaggtagcaggtttccagggg |
259 |
Q |
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| T |
51207667 |
gcttttattgctattttggtttctgttatgttaaggtagcaggtttccagggg |
51207615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 43430280 - 43430057
Alignment:
| Q |
7 |
atgcttctcaaggaaatgtatatgtcagacaacaaacagagaataagaacttgaagaataagaaaaaatagattttatgtgctactgtgtttgacagcag |
106 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43430280 |
atgcttctcaaggaaatttatatgctagacaacaaacagagaataagaacttgaagaataagaaaaaatagattttatgtgctgctgtgtttgacagcag |
43430181 |
T |
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| Q |
107 |
tcctgtgcagagttgcagtttttctgtgatgccactgcagttgcggtttggtgttgtgtttgggaggcttgctagcgtgttttggagttgcttctggctg |
206 |
Q |
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| T |
43430180 |
tcctgtgcagagttgcagtttttccgtgatgccactgcagttgtgatttggtgttgtgtttgggaggcttgctagcgtgtttcggagttgcttctggctg |
43430081 |
T |
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| Q |
207 |
gcttttattgctattttggtttct |
230 |
Q |
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| T |
43430080 |
gcttttattgctattttggtttct |
43430057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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