View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1270-Insertion-4 (Length: 295)

Name: NF1270-Insertion-4
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1270-Insertion-4
NF1270-Insertion-4
[»] chr1 (4 HSPs)
chr1 (8-295)||(49690435-49690712)
chr1 (8-144)||(49678949-49679077)
chr1 (8-144)||(49686316-49686452)
chr1 (252-295)||(49678777-49678820)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 295
Target Start/End: Complemental strand, 49690712 - 49690435
Alignment:
Q  8 aattcaactgttgtaaaagggtatttaagaaacccaagacttccacaatcaaatgattctggacaatcatcactgtgtccatttcctttcctagttaaga 107  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  49690712 aattcaactgttgtaaaagggtatttaaaaaacccaagatttccacaaccaaatgagtctggacaatcaccactgtgtccatttcctttcctagttaaga 49690613  T
Q  108 caagtagcagtaacacaattaaatgagagaacaaaaggaacctaaaatgtaaaacataaactaaagccattcaactgtgtgtgttaaacaatttgttcca 207  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||    
T  49690612 caagtagcagtaacacagtcaaatgagagaacaaaaggaacctaaaatgtaaaacataaactaaagccattcaa----ttgtgttaaacaatttgttcca 49690517  T
Q  208 cacttgttaatttcattgcataaatataaatatatcctttaaatccaattgacacgctggttgacttggaaaatgagtaccacacaag 295  Q
    ||||| |||||    |||||   | |||||||||| |||| || | |||||||||||| |||||||||||||||||||||||||||||    
T  49690516 cactt-ttaat----ttgca-cgacataaatatattctttgaagcaaattgacacgctagttgacttggaaaatgagtaccacacaag 49690435  T

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Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 49679077 - 49678949
Alignment:
Q  8 aattcaactgttgtaaaagggtatttaagaaacccaagacttccacaatcaaatgattctggacaatcatcactgtgtccatttcctttcctagttaaga 107  Q
    ||||||||||||||||||||||||||||  ||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49679077 aattcaactgttgtaaaagggtatttaatcaa--------ttccacaatcaaatgattctggacaatcatcactgtgtccatttcctttcctagttaaga 49678986  T
Q  108 caagtagcagtaacacaattaaatgagagaacaaaag 144  Q
    |||||||||||||||||||||||||||||||||||||    
T  49678985 caagtagcagtaacacaattaaatgagagaacaaaag 49678949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 49686452 - 49686316
Alignment:
Q  8 aattcaactgttgtaaaagggtatttaagaaacccaagacttccacaatcaaatgattctggacaatcatcactgtgtccatttcctttcctagttaaga 107  Q
    ||||||||||| |||||||||||   ||  || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49686452 aattcaactgtggtaaaagggtagccaaccaatccaagatttccacaatcaaatgattctggacaatcatcactgtgtccatttcctttactagttaaga 49686353  T
Q  108 caagtagcagtaacacaattaaatgagagaacaaaag 144  Q
    ||||||||||||||||| | |||||||||||||||||    
T  49686352 caagtagcagtaacacagtcaaatgagagaacaaaag 49686316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 252 - 295
Target Start/End: Complemental strand, 49678820 - 49678777
Alignment:
Q  252 ccaattgacacgctggttgacttggaaaatgagtaccacacaag 295  Q
    |||||||||||| | ||||||||| |||||||||||||||||||    
T  49678820 ccaattgacacgttagttgacttgtaaaatgagtaccacacaag 49678777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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