View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1270-Insertion-5 (Length: 717)
Name: NF1270-Insertion-5
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270-Insertion-5 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 452 - 717
Target Start/End: Original strand, 169203 - 169473
Alignment:
| Q |
452 |
cgatggtcgttttatgtgttagaggtcatttccgaaatgcactaagcaacccttattacattgtctctagacccattttatagaaaaatatggtaattgt |
551 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
169203 |
cgatggtcgttttatgtgttagaggtgatttccgaaatacactaagcaacccttattacattgtctctagacccattttatagaaaaatatggtaattgt |
169302 |
T |
|
| Q |
552 |
ccatgcaaatatagattagttgataatgacaatacattgtaatatgtggagattcgaaccttaaattctctgcttatttaccataaaagtgaattataat |
651 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
169303 |
ccatgcaaatatagattagttgataataacaatgcattgtaatatgtggagattcaaaccttaaattctctgcttatttaccataaaagtgaattataat |
169402 |
T |
|
| Q |
652 |
cactaagct-----tnnnnnnnntgttaactatcacatgcatgcatgtttatcacgttttatatattttga |
717 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
169403 |
cactaagctacttaaaaaaaaaatgttaactatcgcatgcatgcatgtttatcacgttttatatattttga |
169473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 168763 - 168955
Alignment:
| Q |
8 |
taaaatacatgtcacatgattcaagtctgaactcttcatcaatgatgaacgcaacctattatgtggttgacatcctccttagtagtttgtcttaattggg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
168763 |
taaaatacatgtcacatgattcaagtctgaactcttcatcaatgatgaacgcaacctattatgtggttgacatcctccttagtagtttgtcttaattggg |
168862 |
T |
|
| Q |
108 |
tccattgcgacttgtaattgaatatttttattttatttctgacacatcttgtaacttggatagtgtttcattaatatatttattggtctttct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
168863 |
tccattgcgacttgtaattgaatatttttattttatttctgacacatcttgtaacttggatagtgtttcattaatatatttattggtctttct |
168955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 261 - 396
Target Start/End: Original strand, 169016 - 169147
Alignment:
| Q |
261 |
gtgtaaagaagtgtaaaacgtaagggttatagtgcatgaaaagtaaatttgcaagaacttaaatatgcaagaaagtaaatgtgcagaattaatattgaag |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
169016 |
gtgtaaagaagtgtaaaacgtaagggttatagtgcatgaaaagtaaatttgcaagaacttaaatatgcaagaaagtaaatgtgcag----aatattgaag |
169111 |
T |
|
| Q |
361 |
tacgaaaattgtaaatgtgcaagaaattttaagtgc |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
169112 |
tacgaaaattgtaaatgtgcaagaaattttaagtgc |
169147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University