View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1270-Insertion-7 (Length: 260)
Name: NF1270-Insertion-7
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270-Insertion-7 |
 | |
|
| [»] scaffold0200 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0200 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 1872 - 2124
Alignment:
| Q |
8 |
gatattaaataggcctagcactaaattgtatatattcagtattaccagctaagctaaaacatccaaaataacagccaaacaacacacggaagccaaagcc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1872 |
gatattaaataggcctagcactaaattgtatatattcagtattaccagctaagctaaaacatccaaaataacagccaaacaacacacggaagccaaagcc |
1971 |
T |
|
| Q |
108 |
agtcagacacaccacaaagatagcagccacgaaag-aaaaaccttgtcacgaatcacgatgttatattaagaaagacaaaacatccatagaagccaggaa |
206 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1972 |
agacagacacaccacaaagatagcagccacgaaagaaaaaaccttgtcacgaatcacaatgttatattaagacagacaaaacatccatagaagccaggaa |
2071 |
T |
|
| Q |
207 |
caaagctgccaatccaaaacagaaaagcagaacgaagaaaacactaataatac |
259 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2072 |
caaagctgccaatccaaatcagaaaagcagaacgaagaaaacactaataatac |
2124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 41974564 - 41974816
Alignment:
| Q |
8 |
gatattaaataggcctagcactaaattgtatatattcagtattaccagctaagctaaaacatccaaaataacagccaaacaacacacggaagccaaagcc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41974564 |
gatattaaataggcctagcactaaattgtatatattcagtattaccagctaagctaaaacatccaaaataacagccaaacaacacacggaagccaaagcc |
41974663 |
T |
|
| Q |
108 |
agtcagacacaccacaaagatagcagccacgaaag-aaaaaccttgtcacgaatcacgatgttatattaagaaagacaaaacatccatagaagccaggaa |
206 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41974664 |
agacagacacaccacaaagatagcagccacgaaagaaaaaaccttgtcacgaatcacaatgttatattaagacagacaaaacatccatagaagccaggaa |
41974763 |
T |
|
| Q |
207 |
caaagctgccaatccaaaacagaaaagcagaacgaagaaaacactaataatac |
259 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41974764 |
caaagctgccaatccaaatcagaaaagcagaacgaagaaaacactaataatac |
41974816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 111 - 259
Target Start/End: Complemental strand, 1223177 - 1223028
Alignment:
| Q |
111 |
cagacacaccacaaagatagcagccacgaaagaaaaa-ccttgtcacgaatcacgatgttatattaagaaagacaaaacatccatagaagccaggaacaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
1223177 |
cagacacaccacaaagatagcagccacgaaagaaaaaaccttgtcacaaatcacgatgttatattaagacagacaaaacatccatagaagtcaggaacaa |
1223078 |
T |
|
| Q |
210 |
agctgccaatccaaaacagaaaagcagaacgaagaaaacactaataatac |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1223077 |
agctgccaatccaaaacagaaaagcagaacgaagaaaacactaataatac |
1223028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University