View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270-Insertion-8 (Length: 627)
Name: NF1270-Insertion-8
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 382 - 624
Target Start/End: Complemental strand, 20070631 - 20070389
Alignment:
| Q |
382 |
tagtaatagacttgttagtattttgcaactccagatttattatcttgtagagttgacttacaaatgactatagtcattgtgggtatgttggtcatttaat |
481 |
Q |
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| T |
20070631 |
tagtgatagaattattagtattttgcaactccagatttattatcttgtagagttgacttacaaatgactatagtcattgtgggtatgttggtgatttaat |
20070532 |
T |
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| Q |
482 |
tgtggtataacttc-attttaaggcattcaaaatcctcataatgcgaaccttattaaaattttcaagtttgtaggctcatgtccacgtactcattaagga |
580 |
Q |
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| T |
20070531 |
tgtggtataacttcaattttaaggcattcaaaatcctcataatgcgaaccttatttaatttttcaagtttgtaggctcatgtccacgtactcattaa-ga |
20070433 |
T |
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| Q |
581 |
tctggtatgggttttcctaattatcaataagtttcccttggtag |
624 |
Q |
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| T |
20070432 |
tcttgtatgggttttcctaattatcaataagttccccttggtag |
20070389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 134 - 383
Target Start/End: Complemental strand, 20071426 - 20071179
Alignment:
| Q |
134 |
aaccgattcagtccacatggaatgtctctatctagaaatttcttgttcgagaatgcgttcatgcatgctacacatgcaaactactcaagaaagcatcaaa |
233 |
Q |
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| T |
20071426 |
aaccgattcagtccacatggaatgtctctagctagaaatttcttgttcgagaatgcgttcatgc----tacacatgcaaactactcaagaaagcatcaga |
20071331 |
T |
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| Q |
234 |
atgatcgcaaaaatacagcgagaggccgtccaagaacaca--gagaaaggttggacaaaatgtacaaatcaataaacaccatgatcacagatttcacaag |
331 |
Q |
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| T |
20071330 |
atgatcgcaacaataaatcgagaggccatccaagaacacatagagaaatgttggacaaaatgtacaaatcgataaacaccatgatcatggatttcacaag |
20071231 |
T |
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| Q |
332 |
attcaaagaaaggaatcaagttaccaatcaaatgggaatggcagtggagcta |
383 |
Q |
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| T |
20071230 |
attcaaagaaaggaatcaggttaccaatcaaatgggaatgagagtggagcta |
20071179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 12840705 - 12840666
Alignment:
| Q |
19 |
gtccatcaaatttttggcgccattgtcggagattgttgat |
58 |
Q |
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| T |
12840705 |
gtccatcaaatttttggcgccgttgtcggggattgttgat |
12840666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 17769505 - 17769542
Alignment:
| Q |
21 |
ccatcaaatttttggcgccattgtcggagattgttgat |
58 |
Q |
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| T |
17769505 |
ccatcaaatttttggtgccgttgtcggagattgttgat |
17769542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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