View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12700_high_1 (Length: 719)
Name: NF12700_high_1
Description: NF12700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12700_high_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 171 - 702
Target Start/End: Complemental strand, 15878509 - 15877990
Alignment:
| Q |
171 |
aacatttcattattcatccaactataaagtattctctaaaagaaatcttactataaagtatatcatcatgctttatttacatcccagaaacgatataact |
270 |
Q |
| |
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|||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15878509 |
aacattgcattattcatcctactataaagtatcctctaaaagaaatcttactataaagtatatcatcatgctttatttacatcccagaaacgatataact |
15878410 |
T |
|
| Q |
271 |
aatttcacactagatctttctccatttccattttacttgcatttcttgaacctcacaacattcgaaatctcctttcatnnnnnnnnnnnttatagaatct |
370 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| ||||||||||| |
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| T |
15878409 |
aatttcacactagatctttctccatttccattttacttgcaattcttggacctcacaattttcgaaatctcctttcataaaaaaaaaacttatagaatct |
15878310 |
T |
|
| Q |
371 |
cttttgttgcattatcagcatttcttcctttgttacctagtactagtaatttcactgctgcgttggagtgtcaaagtttagtgactctattgtaaaaggt |
470 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15878309 |
cttttgttgcataatcagcatttcttcctttgttacctagtactagtaatttcactgctgcgttggagtgttgaagtttagtgactctattgtaaaaggt |
15878210 |
T |
|
| Q |
471 |
actatagctaatgtattagtttctatcatttttattatttgttcttcaagtgttgatatatgcgatttcaacctagtttctttttctctgcatgataata |
570 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15878209 |
actatagctaatgtatttgtttctatcatttttattatttgttcttcaagtgttgatatatgcgatttcaacctagtttctttttctctgcatgatagta |
15878110 |
T |
|
| Q |
571 |
cttgttttaactatatgacaaaatacttctcttaactatatgcagtaacaaatttgtagatctcaattttagacatacttttaagttttaacccctacat |
670 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15878109 |
cttgtttt------------aaatacttctcttaactatatgcagtaacaaatttgtagatctcaattttagacatacttttaagttttaacccctacac |
15878022 |
T |
|
| Q |
671 |
atatttcttaaaaactacatgtatccgaattt |
702 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |
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|
| T |
15878021 |
atatttcttaaaaactacatctatccgaattt |
15877990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 388 - 702
Target Start/End: Original strand, 15908497 - 15908804
Alignment:
| Q |
388 |
gcatttcttcctttgttacctagtactagtaatttcactgctgcgttggagtgtcaaagtttagtgactctattgtaaaaggtactatagctaatgtatt |
487 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15908497 |
gcatttcttcctttgttacctaatactagtaatttcactgctgcgttggagtgtcaaagtttagggactctattgtaaaaggtactatagctaatgtatt |
15908596 |
T |
|
| Q |
488 |
agtttctatcatttttattatttgttcttcaagtgttgatatatgcgatttcaacctagtttctttttctctgcatgataatacttgttttaactatatg |
587 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||||||||| || |
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| T |
15908597 |
tgtttctatcatttttattatttgttcttcaagtgttgatatatccgatttaaacctagtttctttttctctacatgatagtacttgttttaactatttg |
15908696 |
T |
|
| Q |
588 |
acaaaatacttctcttaactatatgcagtaacaaatttgtagatctcaattttagacatacttttaagttttaacccctacatatatttcttaaaaacta |
687 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
15908697 |
acaaaatgcttctcttaactatatgcagtaacaaatttatagatctcaattttagacatac-------ttttaacccctacatatatttcttaaaagcta |
15908789 |
T |
|
| Q |
688 |
catgtatccgaattt |
702 |
Q |
| |
|
||| | ||||||||| |
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|
| T |
15908790 |
catctttccgaattt |
15908804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 388 - 646
Target Start/End: Original strand, 15891285 - 15891540
Alignment:
| Q |
388 |
gcatttcttcctttgttacctagtactagtaatttcactgctgcgttggagtgtcaaagtttagtgactctattgtaaaaggtactatagctaatgtatt |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||| ||||||| |||||||||||| |
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|
| T |
15891285 |
gcatttcttcctttgttacctagtactagtaatttcactgctgtgttggagtgtcgaagtttagtgact--attgcaaa-ggtactaaagctaatgtatt |
15891381 |
T |
|
| Q |
488 |
agtttctatcatttttattatttgttcttcaagtgttgatatatgcgatttcaacctagtttctttttctctgcatgataatacttgttttaactatatg |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| || |
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| T |
15891382 |
tgtttctatcatttttattatttgttcttcaagtgttgatatatgcgatttcaacctagtttctttttctctacatgatagtacttgttttaactatttg |
15891481 |
T |
|
| Q |
588 |
acaaaatacttctcttaactatatgcagtaacaaatttgtagatctcaattttagacat |
646 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
15891482 |
acaaaatacttctcttaactatatgtagtaacaaatttgtagatctcaattttagacat |
15891540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 15878763 - 15878613
Alignment:
| Q |
1 |
gcattggattcttaatgcatgttaagttaaaggtgaccaacataatttaatgtgacaaatcaaagtataatttaatgtgataaggagtactcctaacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
15878763 |
gcattggattcttaatgcatgttaagttaaaggtgaccaacataatttaatgtgacaaatcaaagtataatttaatgtgataaggagtacccctaacaaa |
15878664 |
T |
|
| Q |
101 |
gttatttgacagatacaatttaaagtagaatcatatacgatgtgtggatca |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15878663 |
gttatttgacagatacaatttaaagtagaatcatatacgatgtgtggatca |
15878613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 171 - 346
Target Start/End: Original strand, 15908285 - 15908460
Alignment:
| Q |
171 |
aacatttcattattcatccaactataaagtattctctaaaagaaatcttactataaagtatatcatcatgctttattt-acatcccagaaacgatataac |
269 |
Q |
| |
|
|||||| |||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
15908285 |
aacattgcattattcatcctactataatgtatcctctaaaagaaatcttactataaagtatatcatcatgctttattttacatcccagaaacgatataac |
15908384 |
T |
|
| Q |
270 |
taatttcacactagatctttctccatttccattttacttgcatttcttgaacctcacaacattcgaaatctcctttc |
346 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||| ||||||| |||| |
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|
| T |
15908385 |
taagttcacactagatctttctccatttccattttacttgcaattcttg-acctcaccactttcaaaatctcttttc |
15908460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 171 - 346
Target Start/End: Original strand, 15891072 - 15891247
Alignment:
| Q |
171 |
aacatttcattattcatccaactataaagtattctctaaaagaaatcttactataaagtatatcatcatgctttattt-acatcccagaaacgatataac |
269 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| |||| |||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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|
| T |
15891072 |
aacattgcattattcatcctactataaagtatcctctcaaagaa-tcttactataaagtatatcatcatgctttgttttacatcccagaaacgatataac |
15891170 |
T |
|
| Q |
270 |
taatttcacactagatctttctccatttccattttacttgcatttcttgaacctcacaacattcgaaatctcctttc |
346 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||| |||| |
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|
| T |
15891171 |
taatttcaccctagatctttctccatttccattttacttacaattcttgaacctcacaactttcaaaatctcttttc |
15891247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 592 - 700
Target Start/End: Original strand, 15890546 - 15890658
Alignment:
| Q |
592 |
aatacttctcttaactatatgcagtaa----caaatttgtagatctcaattttagacatacttttaagttttaacccctacatatatttcttaaaaacta |
687 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
15890546 |
aatacttctcttaaccatatgaagtaattaacaaatttgtagatctcaattttagacatacttttaagttttaacccctgcatatatttcttaaaaacta |
15890645 |
T |
|
| Q |
688 |
catgtatccgaat |
700 |
Q |
| |
|
||| | ||||||| |
|
|
| T |
15890646 |
catctctccgaat |
15890658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 15908065 - 15908148
Alignment:
| Q |
69 |
aatttaatgtgataaggagtactcctaacaaagttatttgacagatacaatttaaagtagaa-tcatatacgatgtgtggatca |
151 |
Q |
| |
|
||||||||||||||||| |||| | |||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
15908065 |
aatttaatgtgataaggtgtacccttaacaaagttatttgatagatacaatttaaagtagaattcatatacaatgtgtggatca |
15908148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 388 - 510
Target Start/End: Original strand, 15890392 - 15890516
Alignment:
| Q |
388 |
gcatttcttcctttgttacctagtactagtaatttcactgctgcgttggagtgtcaaagtttagtgactctat---tgtaaaaggtactatagctaatgt |
484 |
Q |
| |
|
|||||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||||| |||| ||| || |||||||||| || ||||| |
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| T |
15890392 |
gcattttttcctttgttacctcgtactagta-tttcactgctgcgttggagtgttgaagtttaacgactatatatatggtaaaggtactaaagtcaatgt |
15890490 |
T |
|
| Q |
485 |
attagtttctatcatttttattattt |
510 |
Q |
| |
|
| | |||||||||||||||||||||| |
|
|
| T |
15890491 |
aattgtttctatcatttttattattt |
15890516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 15878560 - 15878524
Alignment:
| Q |
144 |
gtggatcagaaactaggtatgaataaaaacatttcat |
180 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15878560 |
gtggattagaaactaggtatgaataaaaacatttcat |
15878524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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