View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12700_high_19 (Length: 237)
Name: NF12700_high_19
Description: NF12700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12700_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 55977770 - 55977993
Alignment:
| Q |
1 |
aagttttcacttcttactccgataacgccaacggtagaactcaatccttcaactcttacaccgaaaacggtaacggcggtgaccaatctttcacttccta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55977770 |
aagttttcacttcttactccgataacgccaacggtagaactcaatccttcaactcttacaccgaaaacggtaacggcggtgaccaatctttcacttccta |
55977869 |
T |
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| Q |
101 |
tggtaaaaacggtaatgggcacactgaagaattcacaaactacggaacaagctccagcactgttggatcggatttttcaaactatgccgaaacctcaaac |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55977870 |
tggtaaaaacggtaatggccacactgaagaattcacaaactacggaacaagctccaacactgttggatcggatttttcaaactatgccgaaacctcaaac |
55977969 |
T |
|
| Q |
201 |
tccggtaacgacagtttcaaaggt |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
55977970 |
tccggtaacgacagtttcaaaggt |
55977993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 14865443 - 14865663
Alignment:
| Q |
1 |
aagttttcacttcttactccgataacgccaacggtagaactcaatccttcaactcttacaccgaaaacggtaacggcggtgaccaatctttcacttccta |
100 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||| |||||||||||| ||||| | ||||||||||||||||| |
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| T |
14865443 |
aagttttcacttcttactccgatagcgccaacggaagaacacaatccttcaactcttacacagaaaacggtaacagcggtcaacaatctttcacttccta |
14865542 |
T |
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| Q |
101 |
tggtaaaaacggtaatgggcacactgaagaattcacaaactacggaacaagctccagcactgttggatcggatttttcaaactatgccgaaacctcaaac |
200 |
Q |
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||||||||||||||||| | ||||||||||||||| | ||||||||||||||||| ||||| |||||||| |||||||||||| ||||||||||||||| |
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| T |
14865543 |
cggtaaaaacggtaatggccccactgaagaattcaccagctacggaacaagctccaacactgctggatcgggtttttcaaactacgccgaaacctcaaac |
14865642 |
T |
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| Q |
201 |
tccggtaacgacagtttcaaa |
221 |
Q |
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|||||||||||||||||||| |
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| T |
14865643 |
gccggtaacgacagtttcaaa |
14865663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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