View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12700_high_4 (Length: 458)
Name: NF12700_high_4
Description: NF12700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12700_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 30 - 444
Target Start/End: Original strand, 38980738 - 38981145
Alignment:
| Q |
30 |
aggagctagactcagccaacttccgcacccgtcaagataataaagcattgaaagaaacaagacaaaaaatattgatctcaaggactttcttcacaaacca |
129 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38980738 |
aggagctagactcagccaagaagagcacccgtcaagataataaagcattgaaagaaacaagacaaaaaatattgatctcaaggactttcttcacaaacca |
38980837 |
T |
|
| Q |
130 |
tcaaaaccaactcaactttcttgatgctcagattgctgatcttaataatgccaagcttgaaaaactacaagttgagagggccaaagttactgagggtcaa |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38980838 |
tcaaaaccaactcaactttcttgatgctcagattgctgatcttaataatgccaagcttgaaaaactacaagttgagagggccaaagttactgagggtcaa |
38980937 |
T |
|
| Q |
230 |
gataaagagaaagataagatcgcatctttaaacaaagaagttaaatcaattttccatcgcctcgctgatgatcaaatcaaattgaaaagtgttgaagatc |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38980938 |
gataaagagaaagataagatcgcatctttaaacaaagaagttaaatcaattttccatcgcctcgctgatgatcaaatcaaattgaaaagtgttgaagatc |
38981037 |
T |
|
| Q |
330 |
aacttcgggaagttgtaattgaattggaaggtcatatgaagctctatcgaatcttccaggcagttcctccattttgatatatgtcattgctttgcctttt |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
38981038 |
aacttcgggaagttgtaattgaattggaaggtcatatgaagctctatcgaatcttccaggcagttcctccattttgat-------attgctttgcctttt |
38981130 |
T |
|
| Q |
430 |
tcgccacaacatttt |
444 |
Q |
| |
|
||||||||||||||| |
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|
| T |
38981131 |
tcgccacaacatttt |
38981145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 62 - 328
Target Start/End: Complemental strand, 39863371 - 39863108
Alignment:
| Q |
62 |
caagataataaagcattgaaagaaacaagacaaaaaatattgatctcaaggactttcttcacaaaccatcaaaaccaactcaactttcttgatgctcaga |
161 |
Q |
| |
|
||||||||| |||||||||| || ||||||||||||||||||| ||| | ||||| | ||||||||||||||| |||| ||||| |||||||||||| | |
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|
| T |
39863371 |
caagataatgaagcattgaaggagacaagacaaaaaatattgacctcgaagacttccctcacaaaccatcaaacacaacgcaactctcttgatgctcaaa |
39863272 |
T |
|
| Q |
162 |
ttgctgatcttaataatgccaagcttgaaaaactacaagttgagagggccaaagttactgagggtcaagataaagagaaagataagatcgcatctttaaa |
261 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||| || |||||| || |||| | ||||| ||||||||||||||||| ||||||| || |
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|
| T |
39863271 |
ttgctgatcttaaa---gccaagcttgaaaaactacaaggtgacagagccaaaattgatgagattgaagatcaagagaaagataagatcacatcttttaa |
39863175 |
T |
|
| Q |
262 |
caaagaagttaaatcaattttccatcgcctcgctgatgatcaaatcaaattgaaaagtgttgaagat |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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|
| T |
39863174 |
caaagaagttaaatcaattttccatcgccttgctaatgatcaaatcaaattgaaaagtgttgaagat |
39863108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 130 - 331
Target Start/End: Complemental strand, 39910119 - 39909926
Alignment:
| Q |
130 |
tcaaaaccaactcaactttcttgatgctcagattgctgatcttaataatgccaagcttgaaaaactacaagttgagagggccaaagttactgagggtcaa |
229 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | || |||| || |||| |
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|
| T |
39910119 |
tcaaaaccaactaaactttcttgatgctcagattgctgatcttaat---gccaagcttgaaaaactacaaggtgacaat--catcgtta---agattcaa |
39910028 |
T |
|
| Q |
230 |
gataaagagaaagataagatcgcatctttaaacaaagaagttaaatcaattttccatcgcctcgctgatgatcaaatcaaattgaaaagtgttgaagatc |
329 |
Q |
| |
|
||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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|
| T |
39910027 |
gatcaagagaaagataggatcgcatctttgaacaaagaagttaaatcaattttccatcgcctctctgatgatcaaatcaaattggaaagtgttgaagatc |
39909928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 179 - 328
Target Start/End: Complemental strand, 39856058 - 39855909
Alignment:
| Q |
179 |
gccaagcttgaaaaactacaagttgagagggccaaagttactgagggtcaagataaagagaaagataagatcgcatctttaaacaaagaagttaaatcaa |
278 |
Q |
| |
|
|||||||||||||||||||||| || |||| ||| | ||||| ||||||| ||||||||||||||||| ||||||| ||||| ||||||||||||| |
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|
| T |
39856058 |
gccaagcttgaaaaactacaaggcgaccgggctaaaatggctgagattcaagatcaagagaaagataagatcacatcttttaacaatgaagttaaatcaa |
39855959 |
T |
|
| Q |
279 |
ttttccatcgcctcgctgatgatcaaatcaaattgaaaagtgttgaagat |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| || ||||||||| |
|
|
| T |
39855958 |
ttttccatcgcctcgctgatgatcaaatcaagttgaagagcgttgaagat |
39855909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 190 - 444
Target Start/End: Original strand, 39738028 - 39738283
Alignment:
| Q |
190 |
aaaactacaagttgagagggccaaagttactgagggtcaagataaagagaaagataagatcgcatctttaaacaaagaagttaaatcaattttccatcgc |
289 |
Q |
| |
|
||||||||||| || ||||||||| || ||||| ||||||| |||||||||||||||| ||||||| || ||||| ||||| ||||||||||| | | |
|
|
| T |
39738028 |
aaaactacaagaagacagggccaaaattgctgagattcaagatcaagagaaagataagattacatctttgaataaagatgttaagtcaattttccagcac |
39738127 |
T |
|
| Q |
290 |
ctcgctgatgatcaaatcaaattgaaaagtgtt-gaagatcaacttcgggaagttgtaattgaattggaaggtcatatgaagctctatcgaatcttccag |
388 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||| ||||||||| ||| |||| | | ||||||||||||| || |||||||| || ||||||| || |
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|
| T |
39738128 |
ctcgttgatgatcaaatcaagttgaaaagtgttggaagatcaaattccggaaactcaatctgaattggaaggttatgagaagctctttcaaatcttcaag |
39738227 |
T |
|
| Q |
389 |
gcagttcctccattttgatatatgtcattgctttgcctttttcgccacaacatttt |
444 |
Q |
| |
|
| | ||||||||||||| ||||| ||| || |||||||| |||||||||||| |
|
|
| T |
39738228 |
aaaatccctccattttgatttatgtatttggttagccttttttaccacaacatttt |
39738283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 138 - 317
Target Start/End: Complemental strand, 39846378 - 39846202
Alignment:
| Q |
138 |
aactcaactttcttgatgctcagattgctgatcttaataatgccaagcttgaaaaactacaagttgagagggccaaagttactgagggtcaagataaaga |
237 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||| |||| ||||||||||||||||| || || |||||| || |||| | ||| | |||| |
|
|
| T |
39846378 |
aactcaactctcttgatactcagattgctgatcttaaa---gccatgcttgaaaaactacaaggggaaagagccaaaattgttgagattgaagctcaaga |
39846282 |
T |
|
| Q |
238 |
gaaagataagatcgcatctttaaacaaagaagttaaatcaattttccatcgcctcgctgatgatcaaatcaaattgaaaa |
317 |
Q |
| |
|
||||| ||||||| | ||| | |||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| |
|
|
| T |
39846281 |
gaaagctaagatcacgtctcttaacaaagaagttaaatcaattttccatcgcctcgctattgatcaagtcaagttgaaaa |
39846202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 62 - 165
Target Start/End: Original strand, 39737924 - 39738027
Alignment:
| Q |
62 |
caagataataaagcattgaaagaaacaagacaaaaaatattgatctcaaggactttcttcacaaaccatcaaaaccaactcaactttcttgatgctcaga |
161 |
Q |
| |
|
||||||| | |||||||||| ||||| ||||| |||||||||| ||||| ||||| ||| |||||| | |||| ||||||||| |||||||||||||| |
|
|
| T |
39737924 |
caagatagtgaagcattgaaggaaaccagacagaaaatattgaactcaatgacttcctttacaaacgaccaaacagaactcaactctcttgatgctcaga |
39738023 |
T |
|
| Q |
162 |
ttgc |
165 |
Q |
| |
|
|||| |
|
|
| T |
39738024 |
ttgc |
39738027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 271
Target Start/End: Original strand, 53495633 - 53495721
Alignment:
| Q |
183 |
agcttgaaaaactacaagttgagagggccaaagttactgagggtcaagataaagagaaagataagatcgcatctttaaacaaagaagtt |
271 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| | ||| | ||||||| |||| |||||||||||| ||||||| |||||||||||| |
|
|
| T |
53495633 |
agcttgaaaaactacaaggtgaaagggccaaactggctgtgattcaagatcaagaaaaagataagatcacatctttgaacaaagaagtt |
53495721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 322
Target Start/End: Complemental strand, 14329415 - 14329318
Alignment:
| Q |
226 |
tcaagataaagaga-aagataagatcgcatctttaaacaaagaagttaaatcaattttccatcgcctcgctgatgatcaaatcaaattgaaaagtgtt |
322 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||||| |||| | ||||||||||||| | |||| ||||| |||||||||||| || || ||||||||| |
|
|
| T |
14329415 |
tcaagatcaagagacaagataagatcacatctttcaacataaaagttaaatcaatatatcatcacctcgttgatgatcaaataaagttaaaaagtgtt |
14329318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 322
Target Start/End: Complemental strand, 14422425 - 14422328
Alignment:
| Q |
226 |
tcaagataaagaga-aagataagatcgcatctttaaacaaagaagttaaatcaattttccatcgcctcgctgatgatcaaatcaaattgaaaagtgtt |
322 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||||| |||| | ||||||||||||| | |||| ||||| |||||||||||| || || ||||||||| |
|
|
| T |
14422425 |
tcaagatcaagagacaagataagatcacatctttcaacataaaagttaaatcaatatatcatcacctcgttgatgatcaaataaagttaaaaagtgtt |
14422328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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