View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12700_high_5 (Length: 451)
Name: NF12700_high_5
Description: NF12700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12700_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 417
Target Start/End: Original strand, 29009191 - 29009581
Alignment:
| Q |
11 |
cagagatagtaggtgttgatgtagctcaggtatatatcatatgttacattaatactatatgccaaaagcaatcattaccaagtgtttttattgaattnnn |
110 |
Q |
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| T |
29009191 |
cagagatagtaggtgttgatgtagctcaggtatatat------------taatactatatgccaaaaacaatcattaccaagtgtttttattgaattaaa |
29009278 |
T |
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| Q |
111 |
nnnntattaaccatatcgttttttgtggttattaattactactatactaggttggatcttcaaattggagtttcttgagtagaaatcatggggcagtgtg |
210 |
Q |
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| T |
29009279 |
aaaatattaaccatattgttttttgtggttattaattact----tactaggttggatcttcaaattggagtttcttgagtagaaatcatggggcagtgtg |
29009374 |
T |
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| Q |
211 |
ggacacaagtagggttccacaaggggcattacaatttcgtatagtggttacatcagggtatgatggtaaatggctatgggcaaaaaaggttcttccagct |
310 |
Q |
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| T |
29009375 |
ggacacaagtagggttccacaaggggcattgcaatttcgtatagtggttacatcagggtatgatggtaaatggctatgggcaaaaaaggttcttccagct |
29009474 |
T |
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| Q |
311 |
gattggaaaaatggggtgatatatgattctgatattcagattacagaaattgcacaagagggttgttcaccatgtaatgatgaaacatggtcataattca |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29009475 |
gattggaaaaatggggtgatatatgattctgatattcagattacagaaattgcacaagagggttgttcaccatgtaatgatgaaacatggtcataattca |
29009574 |
T |
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