View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12700_high_6 (Length: 447)
Name: NF12700_high_6
Description: NF12700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12700_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 44840624 - 44840736
Alignment:
| Q |
76 |
cagcaaatccaccaatatacagagaaatgttaacctaatgaagcaggtatacatatacacacactcaaaaaggggcatcataatcaacacttggttacga |
175 |
Q |
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| T |
44840624 |
cagcaaatccaccaatatacagagaaatgttaacctaatgaagcaagtatacatat--acacactcaaaaaggggcattataatcaacacttggttacga |
44840721 |
T |
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| Q |
176 |
actcagacagaacac |
190 |
Q |
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| T |
44840722 |
actcagacagaacac |
44840736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 372 - 447
Target Start/End: Original strand, 44840918 - 44840993
Alignment:
| Q |
372 |
ctcatttcatttcttgttttctaactattattannnnnnnctttcattttatgagcagagaaggaaaaaagcatgc |
447 |
Q |
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| T |
44840918 |
ctcatttcatttcttgttttctaactattattatttttttctttcattttataagcagagaaagaaaaaagcatgc |
44840993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 44840573 - 44840612
Alignment:
| Q |
11 |
cacagaaggagcctcacaaaataccattcaataagaataa |
50 |
Q |
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| T |
44840573 |
cacagaaggagcctcacaaaataccattcaataagaataa |
44840612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 274
Target Start/End: Original strand, 44840785 - 44840820
Alignment:
| Q |
239 |
ctagttcactttttacactgcttcatcacaaccgtt |
274 |
Q |
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| T |
44840785 |
ctagttcactttttacactgcttcatcacaaccgtt |
44840820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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