View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12700_high_9 (Length: 331)
Name: NF12700_high_9
Description: NF12700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12700_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 48762923 - 48763106
Alignment:
| Q |
18 |
acattagcatctcaacacactcatgtaagatagatgattattctcttagattagtcggttcttggatcgaaaaccaa-tcttnnnnnnnntattatcatc |
116 |
Q |
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| T |
48762923 |
acattaccatctcaacacactcatgtaagatagatgattattatcttagattagtcggttcttggatcgaaaaccaaatcttaaaaaaaatattatcatc |
48763022 |
T |
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| Q |
117 |
ccttccacttatctttccaccatctttttcttcacattcatccatttactctatctacctcatagctcctcaacagctaaaaaa |
200 |
Q |
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| T |
48763023 |
ccttccacttttctttccaccatctttttcttcacattcatccatttactctatctacctcatagctcctcaacagctaaaaaa |
48763106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 208 - 331
Target Start/End: Original strand, 48763245 - 48763368
Alignment:
| Q |
208 |
ttgatatcaaatgcgatgtgtctaatatttttcacacatcactcgtggttaggacagaacatgggctaaaaacaatcatacaccctgttaataaataaag |
307 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48763245 |
ttgatatcaaatgcgatgcgtctaatatttttcacacatcactcgtggttaggacagaacatgggctaaaaacaatcatacaccctgttaataaataaag |
48763344 |
T |
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| Q |
308 |
tgattgtcgtggtatctgcaaatc |
331 |
Q |
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| T |
48763345 |
tgattgtcgtggtatctgcaaatc |
48763368 |
T |
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