View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12700_low_10 (Length: 408)
Name: NF12700_low_10
Description: NF12700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12700_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 14 - 392
Target Start/End: Original strand, 44458874 - 44459252
Alignment:
| Q |
14 |
gttcacttgtctgaaaaagaatccaggaccattctctattgcataaaggagggaaataattctgtcagtaaagcttttacaccattgttacatgaatggt |
113 |
Q |
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| T |
44458874 |
gttcacttgtctgaaaaagaatccaggaccattctctattgcataaaggagggaaataattctgtcagtaaagcttttgcaccattgttacatgaatggt |
44458973 |
T |
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| Q |
114 |
tccgcattggttattcaggtaaaacctcaattgaaaagttccgacaggacttgcagcatatgttcaaaagtagacactctttttcatccgagaaaatgaa |
213 |
Q |
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| T |
44458974 |
tccgcattggttattcaggtaaaacctcaattgaaaagttccgacaggacttgcagcatatgttcaaaagaagacactctttttcatccgagaaaatgaa |
44459073 |
T |
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| Q |
214 |
ggaagcttgtgggttttcatttttaaattctgacaagcagccacataaaagttgtggcaagaattgtttgtcctattcctcatcttctggatccaaaaat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44459074 |
ggaagcttgtgggttttcatttttaaattctgacaagcagccacataaaagttgtggcaagaattgtttgtcctattcctcatcttctggatccaaaaat |
44459173 |
T |
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| Q |
314 |
gtgagcaagtatgagacaccatactccacaggaattaatttgcacatatttttccctgacactgctatgaagttaaatc |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44459174 |
gtgagcaagtatgagacaccatactccacaggaattaatttgcacatatttttccctgacactgctatgaagttaaatc |
44459252 |
T |
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