View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12700_low_12 (Length: 388)
Name: NF12700_low_12
Description: NF12700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12700_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 45818764 - 45819133
Alignment:
| Q |
1 |
aatctcacacaccgaatcattttgcataataataaccnnnnnnnnnnnnncaaattatacagtaccttgagcagatggccttggatcttgttcggcagtt |
100 |
Q |
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| T |
45818764 |
aatctcacacaccgaatcattttgcataataataaccaaaaattaaaaaacaaattatacagtaccttgagcagatggccttggatcttgttcggcagtt |
45818863 |
T |
|
| Q |
101 |
gaattactgtatagcgacagaaaatcatgcgtcgatttcctccctgctcctgtttccgcacagaaaagtttcagaaaacctcatccaaacaatattaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45818864 |
gaattactgtatagcgacagaaaatcatgcgtcgatttcctccctgctcctgtttccgcacagaaaagtttcagaaaacctcatccaaacaatattaatt |
45818963 |
T |
|
| Q |
201 |
caaatcaagttaattattattaatttcctttttcaaaaacacaataatataacaagaaaattataactacctccagctccataagaacgtgtttgaggaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45818964 |
caaatcaagttaattattattaatttcctttttcaaaaaaacaataatataacaagaaaattataactacctccagctccataagaacgtgtttgaggaa |
45819063 |
T |
|
| Q |
301 |
gctccatcaatacttgaatctcaattttcttctctggtacgtaattcaacgtaattttgaaattcggtca |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45819064 |
gctccatcaatacttgaatctcaattttcttctctggtacgtaattcaacgtaattttgaaattcggtca |
45819133 |
T |
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