View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12700_low_13 (Length: 388)
Name: NF12700_low_13
Description: NF12700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12700_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 371
Target Start/End: Complemental strand, 124577 - 124223
Alignment:
| Q |
17 |
agagagattgggagcaagcttaatagaatgggcacatggccggagtagagaaagattgggaatcagataggaagggaaaggaatgattattatagagagt |
116 |
Q |
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| T |
124577 |
agagagattgggagcaagcttaatagaatgggcacatggccggagtagagaaagattgggaatcagataggaagggaaaggaatgattattatagagagt |
124478 |
T |
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| Q |
117 |
gggtagtaaccgtgaggggtttgaagaatttctaagtgggctagggatggttgtggcttagaagagaggctgttttctcagtatttctggtgtttgtcca |
216 |
Q |
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| T |
124477 |
gggtagtaactgtgaggggtttgaagaatttctaagtgggctagggatggttggggcttagaagagaggctgttttctcagtatttctggtgtttgtcca |
124378 |
T |
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| Q |
217 |
tcttttcattttcaatttgcaaggagcttggctatattcacagtaccattttgtttcnnnnnnnnaccatccatatttccacagattgtaagaaaggaat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
124377 |
tcttttcattttcaatttgcaaggagcttggctatattcacagtaccattttgtttcttttttttaccatccatatttccacagattgtaagaaaggaat |
124278 |
T |
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| Q |
317 |
tagccaatgtttaaatattaaataccaataccaattagtttccgtctattgatgt |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
124277 |
tagccaatgtttaaatattaaataccaataccaattagtttctgtctattgatgt |
124223 |
T |
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