View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12700_low_14 (Length: 369)

Name: NF12700_low_14
Description: NF12700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12700_low_14
NF12700_low_14
[»] chr3 (7 HSPs)
chr3 (1-352)||(27203957-27204308)
chr3 (209-246)||(17700605-17700642)
chr3 (209-246)||(17701918-17701955)
chr3 (224-253)||(26107036-26107065)
chr3 (209-246)||(36279039-36279076)
chr3 (209-246)||(36280316-36280353)
chr3 (175-252)||(40205963-40206040)
[»] chr6 (1 HSPs)
chr6 (175-253)||(5265279-5265356)
[»] chr4 (5 HSPs)
chr4 (185-250)||(42391861-42391926)
chr4 (283-326)||(13182841-13182884)
chr4 (211-254)||(32244689-32244732)
chr4 (211-253)||(21621903-21621945)
chr4 (196-252)||(25810399-25810455)
[»] chr8 (5 HSPs)
chr8 (208-252)||(8569489-8569533)
chr8 (211-254)||(28524837-28524880)
chr8 (199-246)||(32898434-32898481)
chr8 (209-246)||(35178803-35178840)
chr8 (210-246)||(35177482-35177518)
[»] chr7 (9 HSPs)
chr7 (199-250)||(24844756-24844807)
chr7 (208-253)||(24844653-24844698)
chr7 (191-250)||(2677767-2677826)
chr7 (199-246)||(10899062-10899109)
chr7 (177-252)||(22621208-22621283)
chr7 (199-246)||(45584485-45584532)
chr7 (199-244)||(7259673-7259718)
chr7 (209-246)||(44334448-44334485)
chr7 (177-253)||(25621688-25621764)
[»] chr2 (4 HSPs)
chr2 (191-249)||(10728987-10729045)
chr2 (211-252)||(34582671-34582712)
chr2 (209-246)||(14704093-14704130)
chr2 (213-250)||(37607185-37607222)
[»] chr5 (6 HSPs)
chr5 (209-250)||(19271425-19271466)
chr5 (199-246)||(4592948-4592995)
chr5 (191-254)||(26327053-26327116)
chr5 (211-257)||(9537098-9537144)
chr5 (209-246)||(546035-546072)
chr5 (209-246)||(2466773-2466810)
[»] chr1 (4 HSPs)
chr1 (211-252)||(44720850-44720891)
chr1 (199-246)||(9339733-9339780)
chr1 (175-252)||(1001867-1001944)
chr1 (209-246)||(7945553-7945590)


Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 27203957 - 27204308
Alignment:
Q  1 ccattgaccattgtttttattctcactgcctattctcacaaggagaaagtcactacttagtgaagtttccagagataacttgtttaacaagttatcgagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27203957 ccattgaccattgtttttattctcactgcctattctcacaaggagaaaatcactacttagtgaagtttccagagataacttgtttaacaagttatcgagt 27204056  T
Q  101 tgattagcgttgatcttagttagtttgctttgatcttagtgttctggtgttgatacctcaccataacttgtttgacaaaatatttgccaactcagcagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27204057 tgattagcgttgatcttagttagtttgctttgatcttagtgttctggtgttgatacctcaccataacttgtttaacaaaatatttgccaactcagcagtt 27204156  T
Q  201 aactgatgtttttaacgtcagggactaaactgataatggaagtgcacattcaagactagctatccgtgtggtctacttttcccaggaagcatgatctttc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  27204157 aactgatgtttttaacgtcagggactaaactgataatggaagtgcacattcaagactagctatccgtgtggtctatatttcccaggaagcatgatctttc 27204256  T
Q  301 aaaattatatggttcagaactcttattgctacatttatgtggtacagagtat 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27204257 aaaattatatggttcagaactcttattgctacatttatgtggtacagagtat 27204308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 17700642 - 17700605
Alignment:
Q  209 tttttaacgtcagggactaaactgataatggaagtgca 246  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  17700642 tttttaacgtcagggactaaagtgataacggaagtgca 17700605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 17701918 - 17701955
Alignment:
Q  209 tttttaacgtcagggactaaactgataatggaagtgca 246  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  17701918 tttttaacgtcagggactaaagtgataacggaagtgca 17701955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 253
Target Start/End: Complemental strand, 26107065 - 26107036
Alignment:
Q  224 actaaactgataatggaagtgcacattcaa 253  Q
    ||||||||||||||||||||||||||||||    
T  26107065 actaaactgataatggaagtgcacattcaa 26107036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 36279076 - 36279039
Alignment:
Q  209 tttttaacgtcagggactaaactgataatggaagtgca 246  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  36279076 tttttaacgtcagggactaaaatgataacggaagtgca 36279039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 36280316 - 36280353
Alignment:
Q  209 tttttaacgtcagggactaaactgataatggaagtgca 246  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  36280316 tttttaacgtcagggactaaagtgataacggaagtgca 36280353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 40206040 - 40205963
Alignment:
Q  175 acaaaatatttgccaactcagcagttaactgatgtttttaacgtcagggactaaactgataatggaagtgcacattca 252  Q
    |||||| |||||||| ||||  |||||||  |  ||||||||| ||  |||||||||||||| |||||||||||||||    
T  40206040 acaaaacatttgccacctcattagttaacataattttttaacgccaatgactaaactgataacggaagtgcacattca 40205963  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 253
Target Start/End: Complemental strand, 5265356 - 5265279
Alignment:
Q  175 acaaaatatttgccaactcagcagttaactgatgtttttaacgtcagggactaaactgataatggaagtgcacattcaa 253  Q
    |||||| ||||| || |||| || ||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  5265356 acaaaacatttgtcacctcatcaattaacagatgtttttaacgtcagg-actaaactgataacggaagtgcacattcaa 5265279  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 42391861 - 42391926
Alignment:
Q  185 tgccaactcagcagttaactgatgtttttaacgtcagggactaaactgataatggaagtgcacatt 250  Q
    ||||| |||| |||||||  || |||||||||||| |||||||||||||||| |||||||||||||    
T  42391861 tgccacctcatcagttaatagaagtttttaacgtctgggactaaactgataaaggaagtgcacatt 42391926  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 13182884 - 13182841
Alignment:
Q  283 caggaagcatgatctttcaaaattatatggttcagaactcttat 326  Q
    |||||||||| |||||||||| |||||||||||| |||||||||    
T  13182884 caggaagcataatctttcaaatttatatggttcacaactcttat 13182841  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 32244689 - 32244732
Alignment:
Q  211 tttaacgtcagggactaaactgataatggaagtgcacattcaag 254  Q
    ||||||||||||||||||| |||||| ||| |||||||||||||    
T  32244689 tttaacgtcagggactaaagtgataacggatgtgcacattcaag 32244732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 21621945 - 21621903
Alignment:
Q  211 tttaacgtcagggactaaactgataatggaagtgcacattcaa 253  Q
    |||||| |||||||||||| |||||| ||||||||||||||||    
T  21621945 tttaacatcagggactaaagtgataacggaagtgcacattcaa 21621903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 25810399 - 25810455
Alignment:
Q  196 cagttaactgatgtttttaacgtcagggactaaactgataatggaagtgcacattca 252  Q
    |||||||| || ||| |||||||||| ||||||| |||||  |||||||||||||||    
T  25810399 cagttaacagaagttattaacgtcagagactaaagtgatagcggaagtgcacattca 25810455  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 8569533 - 8569489
Alignment:
Q  208 gtttttaacgtcagggactaaactgataatggaagtgcacattca 252  Q
    ||||||||||||||||||||||||||||| | |||||||||||||    
T  8569533 gtttttaacgtcagggactaaactgataacgaaagtgcacattca 8569489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 28524880 - 28524837
Alignment:
Q  211 tttaacgtcagggactaaactgataatggaagtgcacattcaag 254  Q
    ||||||||||| ||||||| |||||| |||||||||||||||||    
T  28524880 tttaacgtcagagactaaaatgataacggaagtgcacattcaag 28524837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 32898434 - 32898481
Alignment:
Q  199 ttaactgatgtttttaacgtcagggactaaactgataatggaagtgca 246  Q
    ||||| ||| ||||||||||||||||||||| |||||| |||||||||    
T  32898434 ttaacagatttttttaacgtcagggactaaagtgataacggaagtgca 32898481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 35178803 - 35178840
Alignment:
Q  209 tttttaacgtcagggactaaactgataatggaagtgca 246  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  35178803 tttttaacgtcagggactaaagtgataacggaagtgca 35178840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 35177518 - 35177482
Alignment:
Q  210 ttttaacgtcagggactaaactgataatggaagtgca 246  Q
    |||||||||||||||||||| |||||| |||||||||    
T  35177518 ttttaacgtcagggactaaagtgataacggaagtgca 35177482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 24844807 - 24844756
Alignment:
Q  199 ttaactgatgtttttaacgtcagggactaaactgataatggaagtgcacatt 250  Q
    ||||| || ||||||||| ||||||||||||||||||||||||||| |||||    
T  24844807 ttaacagaagtttttaacatcagggactaaactgataatggaagtgtacatt 24844756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 24844698 - 24844653
Alignment:
Q  208 gtttttaacgtcagggactaaactgataatggaagtgcacattcaa 253  Q
    |||||||||||  | |||||||||||||||||||||||||||||||    
T  24844698 gtttttaacgtttgagactaaactgataatggaagtgcacattcaa 24844653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 2677767 - 2677826
Alignment:
Q  191 ctcagcagttaactgatgtttttaacgtcagggactaaactgataatggaagtgcacatt 250  Q
    |||| ||||||||| | ||||||||||  ||||||||||||||||| | |||||||||||    
T  2677767 ctcatcagttaactaaagtttttaacgcgagggactaaactgataacgaaagtgcacatt 2677826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 10899062 - 10899109
Alignment:
Q  199 ttaactgatgtttttaacgtcagggactaaactgataatggaagtgca 246  Q
    ||||| ||| ||||||||||||||||||||| |||||| |||||||||    
T  10899062 ttaacagatttttttaacgtcagggactaaagtgataacggaagtgca 10899109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 22621283 - 22621208
Alignment:
Q  177 aaaatatttgccaactcagcagttaactgatgtttttaacgtcagggactaaactgataatggaagtgcacattca 252  Q
    |||| ||||| ||||||| |||||||| || |||||||||| ||  ||||| ||||||||  ||||||||||||||    
T  22621283 aaaacatttgtcaactcatcagttaacagaagtttttaacgacatagactagactgataacagaagtgcacattca 22621208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 246
Target Start/End: Original strand, 45584485 - 45584532
Alignment:
Q  199 ttaactgatgtttttaacgtcagggactaaactgataatggaagtgca 246  Q
    ||||| ||| ||||||||||||||||||||| |||||| |||||||||    
T  45584485 ttaacagatttttttaacgtcagggactaaagtgataacggaagtgca 45584532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 7259673 - 7259718
Alignment:
Q  199 ttaactgatgtttttaacgtcagggactaaactgataatggaagtg 244  Q
    ||||| ||| ||||||||||||||||||||| |||||| |||||||    
T  7259673 ttaacagatttttttaacgtcagggactaaagtgataacggaagtg 7259718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 44334448 - 44334485
Alignment:
Q  209 tttttaacgtcagggactaaactgataatggaagtgca 246  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  44334448 tttttaatgtcagggactaaagtgataatggaagtgca 44334485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 253
Target Start/End: Original strand, 25621688 - 25621764
Alignment:
Q  177 aaaatatttgccaactcagcagttaactgatgtttttaacgtcagggactaaactgataatggaagtgcacattcaa 253  Q
    ||||| |||||||| ||| ||||||||  |  | ||||||||||| ||||||| ||||||  |||||||||||||||    
T  25621688 aaaatctttgccaaatcatcagttaacaaaattatttaacgtcagtgactaaagtgataacagaagtgcacattcaa 25621764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 10729045 - 10728987
Alignment:
Q  191 ctcagcagttaactgatgtttttaacgtcagggactaaactgataatggaagtgcacat 249  Q
    |||| ||||||||  | |||||||||||||||| |||||||||||| ||||||||||||    
T  10729045 ctcatcagttaacataagtttttaacgtcaggggctaaactgataacggaagtgcacat 10728987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 34582671 - 34582712
Alignment:
Q  211 tttaacgtcagggactaaactgataatggaagtgcacattca 252  Q
    ||||||||||||||||||| |||||| |||||||||||||||    
T  34582671 tttaacgtcagggactaaagtgataacggaagtgcacattca 34582712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 14704130 - 14704093
Alignment:
Q  209 tttttaacgtcagggactaaactgataatggaagtgca 246  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  14704130 tttttaacgtcagggactaaagtgataacggaagtgca 14704093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 37607222 - 37607185
Alignment:
Q  213 taacgtcagggactaaactgataatggaagtgcacatt 250  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  37607222 taacgtcagggactaaagtgataacggaagtgcacatt 37607185  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 19271466 - 19271425
Alignment:
Q  209 tttttaacgtcagggactaaactgataatggaagtgcacatt 250  Q
    |||||||||||| ||||||||||||||| |||||||||||||    
T  19271466 tttttaacgtcatggactaaactgataacggaagtgcacatt 19271425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 4592995 - 4592948
Alignment:
Q  199 ttaactgatgtttttaacgtcagggactaaactgataatggaagtgca 246  Q
    ||||| ||| ||||||||||||||||||||| |||||| |||||||||    
T  4592995 ttaacagatttttttaacgtcagggactaaagtgataacggaagtgca 4592948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 26327053 - 26327116
Alignment:
Q  191 ctcagcagttaactgatgtttttaacgtcagggactaaactgataatggaagtgcacattcaag 254  Q
    |||| |||||||| ||  |||||||||||| ||||||||||||| | |||||||||||| ||||    
T  26327053 ctcatcagttaacagaaatttttaacgtcaaggactaaactgattacggaagtgcacatccaag 26327116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 9537144 - 9537098
Alignment:
Q  211 tttaacgtcagggactaaactgataatggaagtgcacattcaagact 257  Q
    ||||||||||| ||||||| |||||||||||||||||| ||| ||||    
T  9537144 tttaacgtcagtgactaaagtgataatggaagtgcacagtcatgact 9537098  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 546035 - 546072
Alignment:
Q  209 tttttaacgtcagggactaaactgataatggaagtgca 246  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  546035 tttttaacgtcagggactaaagtgataacggaagtgca 546072  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 2466773 - 2466810
Alignment:
Q  209 tttttaacgtcagggactaaactgataatggaagtgca 246  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  2466773 tttttaacgtcagggactaaagtgataacggaagtgca 2466810  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 44720850 - 44720891
Alignment:
Q  211 tttaacgtcagggactaaactgataatggaagtgcacattca 252  Q
    ||||||||||| ||||||| ||||||||||||||||||||||    
T  44720850 tttaacgtcagagactaaagtgataatggaagtgcacattca 44720891  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 9339780 - 9339733
Alignment:
Q  199 ttaactgatgtttttaacgtcagggactaaactgataatggaagtgca 246  Q
    ||||| ||| ||||||||||||||||||||| |||||| |||||||||    
T  9339780 ttaacagatttttttaacgtcagggactaaagtgataacggaagtgca 9339733  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 1001867 - 1001944
Alignment:
Q  175 acaaaatatttgccaactcagcagttaactgatgtttttaacgtcagggactaaactgataatggaagtgcacattca 252  Q
    |||||| |||| ||| |||| ||||||||  |  |||||||||| || |||||||||||||| |||||| ||||||||    
T  1001867 acaaaacattttccacctcatcagttaacaaaattttttaacgttagagactaaactgataacggaagtacacattca 1001944  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 7945553 - 7945590
Alignment:
Q  209 tttttaacgtcagggactaaactgataatggaagtgca 246  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  7945553 tttttaacgtcagggactaaagtgataacggaagtgca 7945590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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