View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12700_low_18 (Length: 314)
Name: NF12700_low_18
Description: NF12700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12700_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 302
Target Start/End: Original strand, 41302041 - 41302337
Alignment:
| Q |
20 |
tatctcatttatgcatcatataattggcctccaaaaatatgtatta-------agctggnnnnnnnnnnnatatgaaatcttatatgctcattctcgacc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41302041 |
tatctcatttatgcatcatataattggcctccaaaaatatgtattactatttaagctgggttttttt---atatgaaatcttatatgctcattctcgacc |
41302137 |
T |
|
| Q |
113 |
catcgcacactaatagaataccaacacacaaatgatttactaagggttatataatcatgatgagattcttgaaagaaagaaagttccactataagaaaaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41302138 |
catcgcacactaatagaataccaacacacaaatgatttactaagggttatataatcatgatgagactcttgaaagaaagaaagttccactataagaaaaa |
41302237 |
T |
|
| Q |
213 |
cac----------ccgattactcccaaaatttaaaatatttcttttttgggaagtattaaatttattttcctgccctatttttctacgggttacccccta |
302 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41302238 |
cacaactggttttccgattactcccaaaatttaaaatatttcttttttgggaagtattaaatttattttcctgccctatttttctacgggttacccccta |
41302337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University