View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12700_low_2 (Length: 601)
Name: NF12700_low_2
Description: NF12700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12700_low_2 |
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| [»] scaffold0361 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 11 - 591
Target Start/End: Complemental strand, 41570278 - 41569688
Alignment:
| Q |
11 |
agcagagaggaacggattgttaattgattgatccaccatgttaaagacatggttcaagctcctagtagaagaaaacggatcgaacacatctaacaa-taa |
109 |
Q |
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| T |
41570278 |
agcagagaggaacggattgttaattgattgatccaccatgttaaggacatggttcaagctcctagtagaagaaaacggatcgaacacatctaaaaaataa |
41570179 |
T |
|
| Q |
110 |
aacaggaaagaaagataaagttaagtatttgttaatcaaaatatagattgaaattgaatagttatatttttgttagggttagaatgaaacaattttacaa |
209 |
Q |
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| T |
41570178 |
aacaggaaagaaaaataaagttaagtatttgttaatcaaaatatagattgaaattgaatagttatatttttgttagggttagaatgaaacaattttacaa |
41570079 |
T |
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| Q |
210 |
gtgataacaagtaccagaaaaggaagggcgacaaacagcgtccatgatgttgctgtcatcgaagagttcatcgtactggcgcatggcgctggtgttgaat |
309 |
Q |
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| T |
41570078 |
gtgataacaagtaccagaaaaggaagggcgacaaacagcgtccatgatgttgctgtcatcgaagagttcatcgtactggcgcatggcgctggtgttgaat |
41569979 |
T |
|
| Q |
310 |
gagcggg---------aggcagcgggacgaagaagagagttcaagagaaggccggaggagagaaaacgcttgactgaaagggaagaggccattaagattg |
400 |
Q |
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||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41569978 |
gagcgggaggcggaagaggcggcgggacgaagaagagagtttgagagaaggccggaggagagaaaacgcttgactgaaagggaagaggccattaagattg |
41569879 |
T |
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| Q |
401 |
aaaaggtttagaagagaaagagcttgattgcggcagattgttgattggttgggtgtagagtgattagggcaannnnnnnnnnnnnnnnntatatttgaag |
500 |
Q |
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| T |
41569878 |
aaaaggtttagaagagaaagagcttgattgcggcagattgttgattggttgggtgtagagtgattagggcaaagagagagggagagagatatatttgaag |
41569779 |
T |
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| Q |
501 |
gaagcaagtaaattttttctcgaaagatctaaagacttgggaaacaagttatttattattttttaaataaataagcttcatccccatttgg |
591 |
Q |
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| T |
41569778 |
gaagcaagtaaattttttctcgaaagatctaaagacttgggaaacaagttattttttattttttaaataaataagcttcatccccatttgg |
41569688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 9101 - 9193
Alignment:
| Q |
11 |
agcagagaggaacggattgttaattgattgatccaccatgttaaagacatggttcaagctcctagtagaagaaaacggatcgaacacatctaa |
103 |
Q |
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| T |
9101 |
agcagaaaggaatggattgtccattaattgatccaccatgttaagcacctggctcaaactcctagttggagaaaacggatcaaacacatctaa |
9193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 246534 - 246482
Alignment:
| Q |
265 |
tcatcgaagagttcatcgtactggcgcatggcgctggtgttgaatgagcggga |
317 |
Q |
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| T |
246534 |
tcatcggagcgttcgtcgtactggcgcatggcgttggtgttgaatgaacggga |
246482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 317
Target Start/End: Complemental strand, 98216 - 98174
Alignment:
| Q |
275 |
gttcatcgtactggcgcatggcgctggtgttgaatgagcggga |
317 |
Q |
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| T |
98216 |
gttcgtcgtactggcgcatggcgttggtgttgaatgaacggga |
98174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 317
Target Start/End: Complemental strand, 19769314 - 19769276
Alignment:
| Q |
279 |
atcgtactggcgcatggcgctggtgttgaatgagcggga |
317 |
Q |
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| T |
19769314 |
atcgtactggcgcatggcgttggtgttgaatgaacggga |
19769276 |
T |
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