View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12700_low_20 (Length: 295)
Name: NF12700_low_20
Description: NF12700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12700_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 3233404 - 3233688
Alignment:
| Q |
1 |
tgttctgttaatattttcttcatgtaaatcgaaccttaaaaatgtaactcgttgactcctttaatctctagctcaaccaagtgagctacccatcccttaa |
100 |
Q |
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| T |
3233404 |
tgttctgttaatattttcttcatgtaaatcgaaccttaaaaatgtaactctttgactcctttaatctctagctcaaccaagtgagctatccatcccttaa |
3233503 |
T |
|
| Q |
101 |
tattaattgatagcataataagccaatatgcatatataatatggtttgttgtttcttttcgatactaaacatcgttacttttgaggagaattcgtctcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3233504 |
tattaattgatagcataataagccaatatgcatatataatatggtttgttgtttcttttcgatactaaacatcgttacttttgaggagaattcgtctcta |
3233603 |
T |
|
| Q |
201 |
taaagaaggactcttttttttactttcttcattgca-nnnnnnnnnctctttcgttccagtctttcttgtgtgtttaaacttctt |
284 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3233604 |
taaagaaggactcttttttttactttcttcattgcattttttttttctctttcgttccagtctttcttgtgtgtttaaacttctt |
3233688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 97
Target Start/End: Original strand, 15861731 - 15861759
Alignment:
| Q |
69 |
tagctcaaccaagtgagctacccatccct |
97 |
Q |
| |
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| T |
15861731 |
tagctcaaccaagtgagctacccatccct |
15861759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 49437715 - 49437663
Alignment:
| Q |
45 |
taactcgttgactcctttaatctc-tagctcaaccaagtgagctacccatccc |
96 |
Q |
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| T |
49437715 |
taactccttaactcctttaatctcgtaactcaaccaagtgagctacctatccc |
49437663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 32676219 - 32676167
Alignment:
| Q |
45 |
taactcgttgactcctttaatctc-tagctcaaccaagtgagctacccatccc |
96 |
Q |
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||||||||| |||||||||||| | |||||||||||| ||| ||||||||||| |
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| T |
32676219 |
taactcgttaactcctttaatcccatagctcaaccaaatgaactacccatccc |
32676167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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