View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12700_low_21 (Length: 294)

Name: NF12700_low_21
Description: NF12700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12700_low_21
NF12700_low_21
[»] chr3 (5 HSPs)
chr3 (146-284)||(37577740-37577878)
chr3 (146-284)||(37584999-37585137)
chr3 (211-284)||(37583928-37584001)
chr3 (18-97)||(37577613-37577692)
chr3 (16-112)||(37583796-37583891)
[»] chr2 (1 HSPs)
chr2 (200-262)||(3103998-3104060)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 9e-73; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 146 - 284
Target Start/End: Original strand, 37577740 - 37577878
Alignment:
Q  146 gagcatctttgtctttgtgtactcaacggagcatagaaagaacagaaagcagaacaaagcaaagagaagatggagggtgctacaactgcaactgcaatca 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37577740 gagcatctttgtctttgtgtactcaacggagcatagaaagaacagaaagcagaacaaagcaaagagaagatggagggtgctacaactgcaactgcaatca 37577839  T
Q  246 tgaaaatcaacggtggattattaggaaggattatctgtg 284  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37577840 tgaaaatcaacggtggattattaggaaggattatctgtg 37577878  T

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Target: chr3; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 146 - 284
Target Start/End: Original strand, 37584999 - 37585137
Alignment:
Q  146 gagcatctttgtctttgtgtactcaacggagcatagaaagaacagaaagcagaacaaagcaaagagaagatggagggtgctacaactgcaactgcaatca 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37584999 gagcatctttgtctttgtgtactcaacggagcatagaaagaacagaaagcagaacaaagcaaagagaagatggagggtgctacaactgcaactgcaatca 37585098  T
Q  246 tgaaaatcaacggtggattattaggaaggattatctgtg 284  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37585099 tgaaaatcaacggtggattattaggaaggattatctgtg 37585137  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 37583928 - 37584001
Alignment:
Q  211 gaagatggagggtgctacaactgcaactgcaatcatgaaaatcaacggtggattattaggaaggattatctgtg 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37583928 gaagatggagggtgctacaactgcaactgcaatcatgaaaatcaacggtggattattaggaaggattatctgtg 37584001  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 37577613 - 37577692
Alignment:
Q  18 gtgtataaaatatcgtggggcaatttagtaacatgttccattacnnnnnnnnntatctaaacgtggaatcacggtctata 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||| |||||||    
T  37577613 gtgtataaaatatcgtggggcaatttagtaacatgttccattacaaaaaaaaatatctaaacgtggaatcacagtctata 37577692  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 37583796 - 37583891
Alignment:
Q  16 ttgtgtataaaatatcgtggggcaatttagtaacatgttccattacnnnnnnnnntatctaaacgtggaatcacggtctatatataacagtatctag 112  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||         ||||||||||||||||| | |||||||||||| |||||||||    
T  37583796 ttgtgtataaaatatcttggggcaatttagtaacatgttctattac-aaaacaaatatctaaacgtggaatctcagtctatatataatagtatctag 37583891  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 3104060 - 3103998
Alignment:
Q  200 caaagcaaagagaagatggagggtgctacaactgcaactgcaatcatgaaaatcaacggtgga 262  Q
    |||| ||||||||||||| | |||| ||||||| || ||||||||||||||||||||||||||    
T  3104060 caaaacaaagagaagatgaatggtggtacaactccagctgcaatcatgaaaatcaacggtgga 3103998  T

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