View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12700_low_23 (Length: 252)
Name: NF12700_low_23
Description: NF12700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12700_low_23 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 108 - 252
Target Start/End: Original strand, 7949962 - 7950106
Alignment:
| Q |
108 |
ttctaattatacaaaatttttcatacatggtcaaagacaaacaagccaataattttagattgagactacacgttctttagcccaattttgtttcacataa |
207 |
Q |
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| T |
7949962 |
ttctaattatacaaagtttttcatacatggtcaaagacaaacaagccaataattttagattgagactacacgttctttagcccaatcttgtttcacataa |
7950061 |
T |
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| Q |
208 |
ttacaaatcataactcataagtaagctaaccatttaatggatgaa |
252 |
Q |
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| T |
7950062 |
ttacaaatcataactcataagtaagctaaccatttaatggatgaa |
7950106 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 44488086 - 44488122
Alignment:
| Q |
32 |
tatttgaatttacaaagactaaatccaaacaaaaaaa |
68 |
Q |
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| T |
44488086 |
tatttgattttacaaagagtaaatccaaacaaaaaaa |
44488122 |
T |
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