View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12700_low_24 (Length: 252)
Name: NF12700_low_24
Description: NF12700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12700_low_24 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 55977458 - 55977714
Alignment:
| Q |
13 |
cagagtcttgaaaagcacgaaggtgatgaaaatttcaaggcttacagcgataagaatttcaccaactacggaacgagtctacccggtggacacgactcgt |
112 |
Q |
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| T |
55977458 |
cagagtcttgaaaagcacgaaggtgatgaaaatttcaaggcttacagcgataagaatttcaccaactacggaacgagtctacccggtggacacgactcgt |
55977557 |
T |
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| Q |
113 |
tcaaaaacta---------------ctctgacggagaggtgaatgatttccgtcgctacagccgaaactctgccggccataaagaaactttcaccaact- |
196 |
Q |
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| T |
55977558 |
tcaaaaactactcggacggagactactctgacggagaggtgaatgatttctgtcgctacagccgaaactctgccggccataaagaaactttcaccaacta |
55977657 |
T |
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| Q |
197 |
-acgccacaaacgccaacgtcgctgatcaaagctttcacacttacggcgctggagcc |
252 |
Q |
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| T |
55977658 |
cacgccacaaacgccaacgtcgctgatcaaagctttcacacttacggcgctggagcc |
55977714 |
T |
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Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 14865139 - 14865387
Alignment:
| Q |
13 |
cagagtcttgaaaagcacgaaggtgatgaaaatttcaaggcttacagcgataagaatttcaccaactacggaacgagtctacccggtggacacgactcgt |
112 |
Q |
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| T |
14865139 |
cagagtctcgaaaagcacggagatgatgtaaatttcgccatttacagagacaagaacttcaccaactacggaacggatcgacccggtggatttgactcgt |
14865238 |
T |
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| Q |
113 |
tcaaaaactactctgacggaga---------ggtgaatgatttccgtcgctacagccgaaactctgccggccataaagaaactttcaccaactacgccac |
203 |
Q |
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| T |
14865239 |
tcaaaaactactccgacggtgaaaacgttctggtgaacgatttccgtcgctacagccgaaactccgccggccataaagaaaccttcaccagctacgctac |
14865338 |
T |
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| Q |
204 |
aaacgccaacgtcgctgatcaaagctttcacacttacggcgctggagcc |
252 |
Q |
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| T |
14865339 |
caacgccaacgtcgccgatcaaagcttccacacttacggcgccggagcc |
14865387 |
T |
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