View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12700_low_30 (Length: 238)
Name: NF12700_low_30
Description: NF12700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12700_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 22 - 193
Target Start/End: Original strand, 36746564 - 36746735
Alignment:
| Q |
22 |
tgtgaattccagtattcattctcataaggcagtgagatcatgtgataaatgataatgcagaaaacttgtattttaggtggnnnnnnngacacgtaacaca |
121 |
Q |
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| T |
36746564 |
tgtgaattccagtattcattctcataaggcagtgagatcatgtgataaatgataatgcagaaaacttgtattttaggtggaaaaaaagacacgtaacaca |
36746663 |
T |
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| Q |
122 |
ctgaaatcaccacatgcctcaagcaaaagtaaaaacaaatttggcacaaccatgactaaggaaagtggttaa |
193 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36746664 |
ctgaaatcaccacatgcctcaagcaaaaataaaaacaaatttggcacagccatgactaaggaaagtggttaa |
36746735 |
T |
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