View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12700_low_32 (Length: 232)
Name: NF12700_low_32
Description: NF12700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12700_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 38749362 - 38749558
Alignment:
| Q |
17 |
agaaacaccagaagaaagtagtccagaagataaaaaaccaatttatttgagtgtggcattgggatttatcacaggattttggggactatgggggatcatt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38749362 |
agaaacaccagaagaaagtagtccagaagataaaaaaccaatttatttgagtgtggcatcgggatttatcacaggattttggggactatgggggatcatt |
38749461 |
T |
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| Q |
117 |
gttatatgtttttacaataatccttactttggacgaatctatgaaacacatactccttggattacgggtgactcggtgttggatacatatcgtgtcc |
213 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38749462 |
gttatatgtttttacaataatccttactttggaggaatctatgaaacacatactccttggattacgggtgactcggtgttggatacatatcgtgtcc |
38749558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 37165156 - 37165257
Alignment:
| Q |
17 |
agaaacaccagaagaaagtagtccagaagataaaaaaccaatttatttgagtgtggcattgggatttatcacaggattttggggactatgggggatcatt |
116 |
Q |
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|||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
37165156 |
agaaacacatgaagaaagtagtcaagaagataaaaagccaatttatttgagtgtggcattgggatttatcacaggattttggggcctat-ggggatcatt |
37165254 |
T |
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| Q |
117 |
gtt |
119 |
Q |
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||| |
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| T |
37165255 |
gtt |
37165257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 37132705 - 37132806
Alignment:
| Q |
17 |
agaaacaccagaagaaagtagtccagaagataaaaaaccaatttatttgagtgtggcattgggatttatcacaggattttggggactatgggggatcatt |
116 |
Q |
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|||||||| ||||||||||||| |||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
37132705 |
agaaacacatgaagaaagtagtcaagaagataaaaagccaatttatttgagcgtgacattgggatttatcacaggattttggggcctat-ggggatcatt |
37132803 |
T |
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| Q |
117 |
gtt |
119 |
Q |
| |
|
||| |
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| T |
37132804 |
gtt |
37132806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 37139791 - 37139892
Alignment:
| Q |
17 |
agaaacaccagaagaaagtagtccagaagataaaaaaccaatttatttgagtgtggcattgggatttatcacaggattttggggactatgggggatcatt |
116 |
Q |
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|||||||| |||||||| |||| ||||||||||||||||||||||||| ||||| ||||||||||||| || ||||||||||| |||| |||||||||| |
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| T |
37139791 |
agaaacacatgaagaaagaagtcaagaagataaaaaaccaatttatttgtgtgtgacattgggatttatgactggattttggggcctat-ggggatcatt |
37139889 |
T |
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| Q |
117 |
gtt |
119 |
Q |
| |
|
||| |
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|
| T |
37139890 |
gtt |
37139892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 35142715 - 35142622
Alignment:
| Q |
17 |
agaaacaccagaagaaagtagtccagaagataaaaaa-ccaatttatttgagtgtggcattgggatttatcacaggattttggggactatgggg |
109 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
35142715 |
agaaacacatgaacaaagtagtcaagaagataaaaaaaccaatttatttgaatgtggcattgggatttatcacaggattttcgggactttgggg |
35142622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 168
Target Start/End: Complemental strand, 38866568 - 38866518
Alignment:
| Q |
117 |
gttatatgtttttacaataatccttactttggacgaatctatgaaacacata |
168 |
Q |
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||||||||||||||||||| || |||||||||| |||||||||||||||||| |
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|
| T |
38866568 |
gttatatgtttttacaatattc-ttactttggaagaatctatgaaacacata |
38866518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 3022423 - 3022343
Alignment:
| Q |
29 |
agaaagtagtccagaagataaaaaaccaatttatttgagtgtggcattgggatttatcacaggattttggggactatgggg |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3022423 |
agaaagtagtccagaagataaaaaaccaatttatttgagtgtggcattgggatttatcacaggattttggggactatgggg |
3022343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 11242473 - 11242391
Alignment:
| Q |
27 |
gaagaaagtagtccagaagataaaaaaccaatttatttgagtgtggcattgggatttatcacaggattttggggactatgggg |
109 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||| |||||||| |||||||||||||| || ||||| |
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| T |
11242473 |
gaagaaagtagtccagaagatatgaattcaatttatttgagtgtggcattaggatttattacaggattttggggcctttgggg |
11242391 |
T |
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