View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12700_low_4 (Length: 472)
Name: NF12700_low_4
Description: NF12700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12700_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 41241784 - 41241353
Alignment:
| Q |
19 |
atcaaacgagcctgatcaatcacaatgaccaatatagatattaaggcgacacctatgtggaatatgaacccttgaaacttgaactgggaacaacatagat |
118 |
Q |
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| T |
41241784 |
atcaaacaagcctgatcaatcacaatgaccaatatagatattaaggcgacacctatgtagaatatgaacccttgaaacttgaactgggaacaacatagat |
41241685 |
T |
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| Q |
119 |
ccaagtatcatgagcatgaatcaggtacctacctattaagtcccccggagtacaaccttgacgaatacacagtcaacaacaaaaataaacaaattaacct |
218 |
Q |
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| T |
41241684 |
ccaagtatcatgagcatgaatcaggtacgtacctattcagtcccccggagtacaaccttgacgaatacacagtcaacaacaaaaataagcaaa----cct |
41241589 |
T |
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| Q |
219 |
aaacataatgggaaggacccaaaaacaaacatg----tttagaggccaaggtaatgtggcagccctgctgcctatctgcataaactcaaaccttcagacg |
314 |
Q |
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| T |
41241588 |
aaacataatgggaaggacccaaaaacaaacatgcatgtttagaggccaaggtaatgtggcagccctgctgcctatctgcataaactcaaaccttcagacg |
41241489 |
T |
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| Q |
315 |
tcaaggaggcataactgaacatatatcttgttatcgtgaaaacacaacagttcaaacccaatcaagaaatgcgacccaccgacctatcgaaactggaacc |
414 |
Q |
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| T |
41241488 |
tcaaggaggcataactgaacatatatcttgttatcgtgaaaacacaacagtccaaacccaatcaagaaatgcgacccaccgacctattgaaactggaacc |
41241389 |
T |
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| Q |
415 |
aaccggtggaaggagagggttaaacagtggtctgtg |
450 |
Q |
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| T |
41241388 |
aaccagtggaaggagagggttaaacagtggtctgtg |
41241353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 41246003 - 41246072
Alignment:
| Q |
30 |
ctgatcaatcacaatgaccaatatagatattaaggcgacacctatgtggaatatgaacccttgaaacttg |
99 |
Q |
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| T |
41246003 |
ctgagcaatcacaatgaccaatagaggtattaaggcgacgccgatgtgaaacctgaacccttgaaacttg |
41246072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 415
Target Start/End: Original strand, 47940363 - 47940432
Alignment:
| Q |
346 |
tatcgtgaaaacacaacagttcaaacccaatcaagaaatgcgacccaccgacctatcgaaactggaacca |
415 |
Q |
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| T |
47940363 |
tatcgtgaaaacacaacaatccaaatccaatctagaaatgcaacccgccaacctagcgaaactggaacca |
47940432 |
T |
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