View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12701_high_12 (Length: 332)

Name: NF12701_high_12
Description: NF12701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12701_high_12
NF12701_high_12
[»] chr4 (3 HSPs)
chr4 (35-324)||(52481087-52481376)
chr4 (71-221)||(16408012-16408162)
chr4 (221-320)||(16408195-16408294)
[»] chr2 (8 HSPs)
chr2 (50-221)||(41477549-41477720)
chr2 (43-221)||(40751804-40751982)
chr2 (42-221)||(41484555-41484734)
chr2 (50-142)||(41470740-41470832)
chr2 (221-324)||(40751668-40751771)
chr2 (221-324)||(41477413-41477516)
chr2 (252-320)||(41470535-41470603)
chr2 (253-320)||(41484423-41484490)
[»] chr6 (1 HSPs)
chr6 (42-86)||(6146417-6146461)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 35 - 324
Target Start/End: Complemental strand, 52481376 - 52481087
Alignment:
Q  35 ataataataataataacatttaaatgctgagaaaaatacatacacttattaacttttttcgggcatcttgcaactcgtcattagttttgcgctcctggac 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52481376 ataataataataataacatttaaatgctgagaaaaatacatacacttattaacttttttcgggcatcttgcaactcgtcattagttttgcgctcctggac 52481277  T
Q  135 aacaagtgttcgttgaagatcatccatgtcttgaaggccctcttctttttcctgcagctccatttcgattgcctccagttttttctttacctcgaaagct 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52481276 aacaagtgttcgttgaagatcatccatgtcttgaaggccctcttctttttcctgcagctccatttcgattgcctccagttttttctttacctcgaaagct 52481177  T
Q  235 tctctcaactgttcaatttccaattccaatgcttgttttgcatcaagacctctctgtaggtcatggattttcttgtgaagtttctccttt 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52481176 tctctcaactgttcaatttccaattccaatgcttgttttgcatcaagacctctctgtaggtcatggattttcttgtgaagtttctccttt 52481087  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 71 - 221
Target Start/End: Original strand, 16408012 - 16408162
Alignment:
Q  71 tacatacacttattaacttttttcgggcatcttgcaactcgtcattagttttgcgctcctggacaacaagtgttcgttgaagatcatccatgtcttgaag 170  Q
    |||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| || |||||||||||| |||||||||| ||||   | |  |     
T  16408012 tacatacacttattaattttttgcgagcatcttgcaactcgtcattagttttgcgctcttgaacaacaagtgtttgttgaagatcttccacaccctccaa 16408111  T
Q  171 gccctcttctttttcctgcagctccatttcgattgcctccagttttttctt 221  Q
      ||||||| ||||||||||||||||||  |||||| |||| |||||||||    
T  16408112 ttcctcttccttttcctgcagctccattctgattgcttccaattttttctt 16408162  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 221 - 320
Target Start/End: Original strand, 16408195 - 16408294
Alignment:
Q  221 ttacctcgaaagcttctctcaactgttcaatttccaattccaatgcttgttttgcatcaagacctctctgtaggtcatggattttcttgtgaagtttctc 320  Q
    |||||| ||||||| |||| | | |||||| |||||| ||||||||||||||||||||||| |||||||  |||||||| ||||||||||||||||||||    
T  16408195 ttacctggaaagctcctcttagccgttcaacttccaactccaatgcttgttttgcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctc 16408294  T

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Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 50 - 221
Target Start/End: Complemental strand, 41477720 - 41477549
Alignment:
Q  50 acatttaaatgctgagaaaaatacatacacttattaacttttttcgggcatcttgcaactcgtcattagttttgcgctcctggacaacaagtgttcgttg 149  Q
    ||||||| ||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||| ||||    
T  41477720 acatttatatgctgagaaagatacatacacttatcaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtgtttgttg 41477621  T
Q  150 aagatcatccatgtcttgaaggccctcttctttttcctgcagctccatttcgattgcctccagttttttctt 221  Q
    |||||| |||| | |||  |   ||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  41477620 aagatcttccacgccttccaattcctcttctttttcctgcagctccattttgatttcctccagttttttctt 41477549  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 43 - 221
Target Start/End: Complemental strand, 40751982 - 40751804
Alignment:
Q  43 aataataacatttaaatgctgagaaaaatacatacacttattaacttttttcgggcatcttgcaactcgtcattagttttgcgctcctggacaacaagtg 142  Q
    |||| ||| ||||| |||| ||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||| ||||    
T  40751982 aatattaatatttatatgccgaggaagatacatacacttattaactttttgcgggcatcttgcaattcgtcattagttttgcgttcctgaacaaccagtg 40751883  T
Q  143 ttcgttgaagatcatccatgtcttgaaggccctcttctttttcctgcagctccatttcgattgcctccagttttttctt 221  Q
    || |||||||||| |||| ||  |  |   ||||||| ||||||||||||||||||  |||||| |||| |||||||||    
T  40751882 tttgttgaagatcttccacgttctccaattcctcttccttttcctgcagctccattctgattgcttccaattttttctt 40751804  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 42 - 221
Target Start/End: Complemental strand, 41484734 - 41484555
Alignment:
Q  42 taataataacatttaaatgctgagaaaaatacatacacttattaacttttttcgggcatcttgcaactcgtcattagttttgcgctcctggacaacaagt 141  Q
    ||||| ||||||||| |||||||| || |||||||||  |||||||||||| |||||||||||||| ||||||||||||||||||||||| || || |||    
T  41484734 taatattaacatttatatgctgaggaagatacatacagctattaactttttgcgggcatcttgcaattcgtcattagttttgcgctcctgaactactagt 41484635  T
Q  142 gttcgttgaagatcatccatgtcttgaaggccctcttctttttcctgcagctccatttcgattgcctccagttttttctt 221  Q
    ||| |||||||||| ||||   | |  |   ||||||| ||||||||||||||||||  |||||| |||| |||||||||    
T  41484634 gtttgttgaagatcttccacaccctctaattcctcttccttttcctgcagctccattctgattgcttccaattttttctt 41484555  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 41470832 - 41470740
Alignment:
Q  50 acatttaaatgctgagaaaaatacatacacttattaacttttttcgggcatcttgcaactcgtcattagttttgcgctcctggacaacaagtg 142  Q
    ||||||| ||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  41470832 acatttatatgctgagaaagatacatacacttatcaattttttgcgggcatcttgcaactcgtcattagttttgcgctcttgaacaaccagtg 41470740  T

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Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 221 - 324
Target Start/End: Complemental strand, 40751771 - 40751668
Alignment:
Q  221 ttacctcgaaagcttctctcaactgttcaatttccaattccaatgcttgttttgcatcaagacctctctgtaggtcatggattttcttgtgaagtttctc 320  Q
    |||||| ||||||| || ||| |||||| || |||||||||||||||||||||||||| || |||||||  |||||||| ||||||||||||||||||||    
T  40751771 ttacctggaaagctcctttcagctgttctatctccaattccaatgcttgttttgcatccagtcctctctccaggtcatgaattttcttgtgaagtttctc 40751672  T
Q  321 cttt 324  Q
    ||||    
T  40751671 cttt 40751668  T

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Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 221 - 324
Target Start/End: Complemental strand, 41477516 - 41477413
Alignment:
Q  221 ttacctcgaaagcttctctcaactgttcaatttccaattccaatgcttgttttgcatcaagacctctctgtaggtcatggattttcttgtgaagtttctc 320  Q
    |||||| ||||||| || ||| | |||| || ||||| ||||||||||||||||||||||| |||||||  |||||||| ||||||||||||||||||||    
T  41477516 ttacctggaaagctcctttcagccgttctatctccaactccaatgcttgttttgcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctc 41477417  T
Q  321 cttt 324  Q
    ||||    
T  41477416 cttt 41477413  T

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Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 252 - 320
Target Start/End: Complemental strand, 41470603 - 41470535
Alignment:
Q  252 ttccaattccaatgcttgttttgcatcaagacctctctgtaggtcatggattttcttgtgaagtttctc 320  Q
    |||||||||||||| |||||||||| ||||||||||||  |||||||| ||||||||||||||||||||    
T  41470603 ttccaattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctc 41470535  T

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Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 41484490 - 41484423
Alignment:
Q  253 tccaattccaatgcttgttttgcatcaagacctctctgtaggtcatggattttcttgtgaagtttctc 320  Q
    |||||||||||||| ||||| |||||||| |||||||  |||||||| ||||||||||||||||||||    
T  41484490 tccaattccaatgcctgtttagcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctc 41484423  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 6146461 - 6146417
Alignment:
Q  42 taataataacatttaaatgctgagaaaaatacatacacttattaa 86  Q
    ||||| ||||||||| || |||||||| |||||||||||||||||    
T  6146461 taatattaacatttatattctgagaaagatacatacacttattaa 6146417  T

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