View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12701_high_17 (Length: 290)
Name: NF12701_high_17
Description: NF12701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12701_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 24518042 - 24518303
Alignment:
| Q |
18 |
catgacccttgcaaaaaatgatagtactatagttccaaaccttaactttatatatgtagcaaagtgtttagtaaattaatatcacacagctcttggatat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24518042 |
catgacccttgcaaaaaatgatagtactatagttccaaaccttaactttatacatgtagcaaagtgtttagtaaattaatatcacacagctcttggatat |
24518141 |
T |
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| Q |
118 |
aggttatggaccatcaatggctggcttaattacagtaaggaatagtacattgtacaatatagtaaagagaacaagtccaccagctagaagtgcaagaaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24518142 |
aggttatggaccatcaatggctggcttaattacagtaaggaatagtacattgtacaatatagtaaagagaacaagtccaccagctagaagtgcaagaaag |
24518241 |
T |
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| Q |
218 |
gactctgaaatttctagcttaccattgttttcacttatcacctcctctctcgtaggcttcat |
279 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24518242 |
gactctgaaatttccagcttaccattgttttcacttatcacctcctctctcgtaggcttcat |
24518303 |
T |
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