View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12701_high_2 (Length: 524)
Name: NF12701_high_2
Description: NF12701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12701_high_2 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 11 - 510
Target Start/End: Complemental strand, 43998575 - 43998076
Alignment:
| Q |
11 |
caaaggaacgagctttgagacgtgttgttggtgatccatttaagaagggtgtagagcaaggtcctcaggtatttttatattaagttaactttattactat |
110 |
Q |
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| T |
43998575 |
caaaggaacgagctttgagacgtgttgttggtgatccatttaagaagggtgtagagcaaggtcctcaggtatttttatattaagttaactttattactat |
43998476 |
T |
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| Q |
111 |
tgtaacgttaccttataggtctatattccttgtctcannnnnnnnnnnnnnnnctagtgtttattcgactaaccttttcatgggaaaaagctaatgtttg |
210 |
Q |
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| T |
43998475 |
tgtaacgttactttataggtctatattccttgtctcatttttctttttcttttctagtgtttattcgactaaccttttcatgggaaaaagctaatgtttg |
43998376 |
T |
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| Q |
211 |
acagaacaacacattcttgatcatactatgatttaacaacataacactgttttgtggtccttgcaaataatcgcagattgattcgaaacaatttgagaaa |
310 |
Q |
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| T |
43998375 |
acagaacaacacattcttgatcatactatgatttaacaacataacactgttttgtggtccttgcaaataatcgcagattgattcgaaacaatttgagaaa |
43998276 |
T |
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| Q |
311 |
gtacttaggtatataaagtctggaattgatagcaatgctacacttgaatgtggaggtgggagattgggttccaaaggcttctttgtccagccaactgtat |
410 |
Q |
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| T |
43998275 |
gtacttaggtatataaagtctggaattgatagcaatgctacacttgaatgtggaggtgggagattgggttccaaaggcttctttgtccagccaactgtat |
43998176 |
T |
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| Q |
411 |
tttcaaatgttcaggtattggttatttgccacaagtgactgtttacagaaatgcaccgtaagaccgtgtattgtggaccattttctaacacatgttaatg |
510 |
Q |
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| T |
43998175 |
tttcaaatgttcaggtattgattatttgccacaagtgactgtttacagaaatgcaccgtaagaccgtgtattgtggaccattttctaacacatgttaatg |
43998076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 18194925 - 18194813
Alignment:
| Q |
184 |
cttttcatgggaaaaagctaatgtttgacagaacaacacattcttgatcatactatgatttaacaacataacactgttttgtggtccttgcaaataatcg |
283 |
Q |
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| T |
18194925 |
cttttcatgggaaag-gttaatgtttgacggaacaacatactcttgatcatacgataatgtaaca---taacactgttttgtggtccttgcaaaaaatca |
18194830 |
T |
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| Q |
284 |
cagattgattcgaaaca |
300 |
Q |
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| T |
18194829 |
tagatcgatttgaaaca |
18194813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 35210857 - 35210798
Alignment:
| Q |
22 |
gctttgagacgtgttgttggtgatccatttaagaagggtgtagagcaaggtcctcaggta |
81 |
Q |
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| T |
35210857 |
gctttgagacgtgttgttggcgatccattcaagaaaggtgtagaacaaggtcctcaggta |
35210798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 344 - 426
Target Start/End: Complemental strand, 35210396 - 35210314
Alignment:
| Q |
344 |
aatgctacacttgaatgtggaggtgggagattgggttccaaaggcttctttgtccagccaactgtattttcaaatgttcaggt |
426 |
Q |
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| T |
35210396 |
aatgctactcttgaatgtggtggtgacagaattggcacaaaaggcttctttgtccaaccaacagtcttctcaaatgttcaggt |
35210314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 286121 - 286233
Alignment:
| Q |
184 |
cttttcatgggaaaaagctaatgtttgacagaacaacacattcttgatcatactatgatttaacaacataacactgttttgtggtccttgcaaataatcg |
283 |
Q |
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| T |
286121 |
cttttcatgggaaag-gttaatgtttgacggaacaacatactcttgatcatacgataatgtaaca---taacactgttttgtggtccttgcaaaaaatca |
286216 |
T |
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| Q |
284 |
cagattgattcgaaaca |
300 |
Q |
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| T |
286217 |
tagatcgatttgaaaca |
286233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 292477 - 292589
Alignment:
| Q |
184 |
cttttcatgggaaaaagctaatgtttgacagaacaacacattcttgatcatactatgatttaacaacataacactgttttgtggtccttgcaaataatcg |
283 |
Q |
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| T |
292477 |
cttttcatgggaaag-gttaatgtttgacggaacaacatactcttgatcatacgataatgtaaca---taacactgttttgtggtccttgcaaaaaatca |
292572 |
T |
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| Q |
284 |
cagattgattcgaaaca |
300 |
Q |
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| T |
292573 |
tagatcgatttgaaaca |
292589 |
T |
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