View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12701_high_20 (Length: 269)

Name: NF12701_high_20
Description: NF12701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12701_high_20
NF12701_high_20
[»] chr5 (28 HSPs)
chr5 (20-250)||(28188603-28188849)
chr5 (188-248)||(38040267-38040327)
chr5 (187-230)||(11246546-11246589)
chr5 (187-230)||(25660912-25660955)
chr5 (187-230)||(35813294-35813337)
chr5 (184-229)||(41405141-41405186)
chr5 (197-230)||(42781646-42781679)
chr5 (187-230)||(6447532-6447576)
chr5 (187-227)||(17557030-17557070)
chr5 (182-230)||(36116929-36116977)
chr5 (187-226)||(3535992-3536031)
chr5 (192-230)||(9409002-9409041)
chr5 (187-230)||(20186866-20186909)
chr5 (187-230)||(22867044-22867087)
chr5 (187-230)||(36742019-36742062)
chr5 (187-230)||(40250229-40250272)
chr5 (187-229)||(28537135-28537177)
chr5 (187-245)||(31934912-31934970)
chr5 (186-230)||(1463869-1463914)
chr5 (187-247)||(9963415-9963476)
chr5 (189-230)||(29561645-29561686)
chr5 (187-230)||(6806692-6806736)
chr5 (190-226)||(17178278-17178314)
chr5 (187-231)||(31004181-31004225)
chr5 (190-226)||(31280602-31280638)
chr5 (190-230)||(31556821-31556861)
chr5 (198-230)||(31907662-31907694)
chr5 (198-230)||(38040144-38040176)
[»] chr4 (38 HSPs)
chr4 (193-249)||(42432014-42432070)
chr4 (186-229)||(56913-56956)
chr4 (187-249)||(36045830-36045892)
chr4 (188-232)||(17431378-17431422)
chr4 (186-230)||(20610738-20610782)
chr4 (187-230)||(49039497-49039540)
chr4 (187-249)||(38657540-38657602)
chr4 (187-230)||(4419738-4419781)
chr4 (192-227)||(12585614-12585649)
chr4 (187-230)||(12796666-12796709)
chr4 (187-230)||(20166316-20166359)
chr4 (187-230)||(41492550-41492593)
chr4 (184-234)||(25714501-25714551)
chr4 (187-232)||(53621200-53621245)
chr4 (186-230)||(1589209-1589253)
chr4 (190-230)||(14504685-14504725)
chr4 (187-230)||(36008274-36008318)
chr4 (187-227)||(44449522-44449562)
chr4 (187-230)||(48512198-48512242)
chr4 (187-231)||(53335308-53335352)
chr4 (188-230)||(9084759-9084802)
chr4 (187-226)||(15853822-15853861)
chr4 (187-230)||(27921896-27921939)
chr4 (187-230)||(43049985-43050028)
chr4 (187-230)||(49319393-49319436)
chr4 (187-230)||(54854231-54854274)
chr4 (196-230)||(37997898-37997932)
chr4 (190-231)||(8241424-8241465)
chr4 (187-231)||(30152127-30152172)
chr4 (185-230)||(42758215-42758260)
chr4 (186-230)||(56531288-56531333)
chr4 (187-230)||(2565260-2565304)
chr4 (187-230)||(12820457-12820501)
chr4 (187-227)||(20925093-20925132)
chr4 (187-230)||(28520783-28520827)
chr4 (197-229)||(30565364-30565396)
chr4 (187-227)||(39449400-39449440)
chr4 (187-230)||(53815695-53815739)
[»] chr1 (46 HSPs)
chr1 (187-230)||(18179328-18179371)
chr1 (187-230)||(9768861-9768904)
chr1 (187-230)||(18003816-18003859)
chr1 (188-232)||(28417328-28417372)
chr1 (190-230)||(47141858-47141898)
chr1 (188-232)||(47645846-47645890)
chr1 (193-232)||(2903077-2903116)
chr1 (187-230)||(42908771-42908814)
chr1 (187-230)||(43327010-43327053)
chr1 (187-230)||(52961134-52961177)
chr1 (187-229)||(1580829-1580871)
chr1 (188-230)||(4605894-4605936)
chr1 (187-249)||(7015720-7015782)
chr1 (188-246)||(9769616-9769674)
chr1 (187-229)||(9931087-9931129)
chr1 (187-232)||(5862128-5862173)
chr1 (187-236)||(9004346-9004395)
chr1 (186-230)||(1721139-1721183)
chr1 (187-230)||(9527425-9527469)
chr1 (190-230)||(18646691-18646731)
chr1 (194-230)||(50199528-50199564)
chr1 (191-230)||(3341788-3341827)
chr1 (187-230)||(7906378-7906421)
chr1 (187-246)||(9410364-9410422)
chr1 (187-230)||(37262157-37262200)
chr1 (187-246)||(42801879-42801938)
chr1 (187-230)||(43020611-43020654)
chr1 (187-230)||(46670896-46670939)
chr1 (180-230)||(5684115-5684165)
chr1 (188-230)||(33176155-33176197)
chr1 (189-230)||(47939250-47939292)
chr1 (186-227)||(3553336-3553377)
chr1 (198-227)||(3569055-3569084)
chr1 (186-230)||(13870133-13870178)
chr1 (198-247)||(13941330-13941379)
chr1 (186-230)||(195043-195087)
chr1 (187-227)||(3140358-3140398)
chr1 (187-230)||(29491469-29491513)
chr1 (187-227)||(33694542-33694582)
chr1 (187-230)||(39238715-39238759)
chr1 (187-230)||(40678822-40678866)
chr1 (187-230)||(47763437-47763481)
chr1 (187-227)||(49632293-49632333)
chr1 (197-229)||(50575911-50575943)
chr1 (187-231)||(51917553-51917597)
chr1 (187-230)||(52833158-52833202)
[»] chr7 (34 HSPs)
chr7 (186-246)||(1513486-1513546)
chr7 (187-229)||(17305443-17305485)
chr7 (190-230)||(35498401-35498441)
chr7 (187-230)||(8766863-8766906)
chr7 (191-230)||(24427367-24427406)
chr7 (187-226)||(38032911-38032950)
chr7 (187-230)||(43209401-43209444)
chr7 (187-230)||(43635588-43635631)
chr7 (187-246)||(45198134-45198193)
chr7 (187-229)||(8147239-8147281)
chr7 (188-230)||(32534637-32534679)
chr7 (188-226)||(43712369-43712407)
chr7 (187-229)||(44409201-44409243)
chr7 (187-232)||(7392356-7392401)
chr7 (193-230)||(23799306-23799343)
chr7 (187-227)||(3246541-3246581)
chr7 (187-223)||(14772394-14772430)
chr7 (187-223)||(15222846-15222882)
chr7 (187-230)||(21285405-21285449)
chr7 (190-230)||(35195846-35195886)
chr7 (194-233)||(2639626-2639665)
chr7 (187-230)||(7465466-7465509)
chr7 (187-230)||(32814827-32814870)
chr7 (187-230)||(37410533-37410576)
chr7 (192-230)||(10020521-10020559)
chr7 (197-231)||(19924777-19924811)
chr7 (186-230)||(20527481-20527526)
chr7 (201-230)||(32309200-32309229)
chr7 (186-230)||(38451861-38451906)
chr7 (186-227)||(41012636-41012677)
chr7 (187-230)||(14818417-14818461)
chr7 (187-230)||(15265415-15265459)
chr7 (187-230)||(31475892-31475936)
chr7 (187-230)||(41139086-41139130)
[»] chr6 (28 HSPs)
chr6 (190-230)||(20858435-20858475)
chr6 (187-226)||(9422833-9422872)
chr6 (187-230)||(22730754-22730797)
chr6 (187-230)||(34524875-34524918)
chr6 (188-230)||(4844144-4844186)
chr6 (188-229)||(8309165-8309206)
chr6 (187-230)||(9031766-9031809)
chr6 (188-230)||(30833018-30833060)
chr6 (192-229)||(17347260-17347297)
chr6 (192-245)||(30905488-30905541)
chr6 (187-230)||(2945595-2945639)
chr6 (187-227)||(31639141-31639181)
chr6 (190-238)||(32394028-32394076)
chr6 (187-230)||(8175996-8176039)
chr6 (187-230)||(10455742-10455785)
chr6 (187-230)||(17305516-17305559)
chr6 (187-230)||(30668236-30668279)
chr6 (190-232)||(1488091-1488133)
chr6 (192-230)||(17176154-17176192)
chr6 (196-230)||(17751389-17751423)
chr6 (187-229)||(19135929-19135971)
chr6 (197-230)||(8253642-8253675)
chr6 (188-249)||(14949053-14949114)
chr6 (187-232)||(33947383-33947428)
chr6 (187-230)||(9064865-9064909)
chr6 (188-232)||(14948834-14948878)
chr6 (187-230)||(14981754-14981798)
chr6 (187-227)||(31411116-31411156)
[»] scaffold0712 (1 HSPs)
scaffold0712 (187-230)||(4520-4563)
[»] scaffold0709 (1 HSPs)
scaffold0709 (187-230)||(4540-4583)
[»] scaffold0168 (1 HSPs)
scaffold0168 (187-230)||(34085-34128)
[»] chr8 (29 HSPs)
chr8 (187-230)||(7345428-7345471)
chr8 (187-232)||(216197-216242)
chr8 (187-232)||(220412-220457)
chr8 (187-232)||(689567-689612)
chr8 (187-232)||(692757-692802)
chr8 (187-232)||(696966-697011)
chr8 (187-232)||(729820-729865)
chr8 (187-232)||(734035-734080)
chr8 (187-232)||(853715-853760)
chr8 (187-232)||(857931-857976)
chr8 (186-230)||(14011090-14011134)
chr8 (186-230)||(26657855-26657899)
chr8 (188-236)||(37989087-37989135)
chr8 (187-230)||(18577113-18577156)
chr8 (187-230)||(39432380-39432423)
chr8 (188-230)||(16808413-16808455)
chr8 (187-230)||(2696532-2696576)
chr8 (187-246)||(10292351-10292411)
chr8 (187-230)||(38790625-38790669)
chr8 (187-230)||(4955035-4955078)
chr8 (187-230)||(29937210-29937253)
chr8 (187-245)||(12986472-12986530)
chr8 (200-230)||(22847314-22847344)
chr8 (187-230)||(2800018-2800062)
chr8 (187-230)||(14012611-14012655)
chr8 (186-230)||(17467277-17467321)
chr8 (187-230)||(21133571-21133615)
chr8 (189-249)||(29653056-29653116)
chr8 (197-245)||(36593204-36593252)
[»] chr3 (36 HSPs)
chr3 (187-230)||(16874242-16874285)
chr3 (187-230)||(24130559-24130602)
chr3 (180-229)||(12143460-12143509)
chr3 (187-228)||(30745785-30745826)
chr3 (187-227)||(3461779-3461819)
chr3 (186-230)||(4010070-4010114)
chr3 (186-230)||(31108812-31108856)
chr3 (187-230)||(3973302-3973345)
chr3 (187-230)||(3996531-3996574)
chr3 (187-230)||(6951842-6951885)
chr3 (187-230)||(19137619-19137662)
chr3 (188-227)||(23305747-23305786)
chr3 (187-230)||(24160580-24160623)
chr3 (189-227)||(33533205-33533243)
chr3 (188-230)||(51017791-51017833)
chr3 (187-228)||(40160735-40160776)
chr3 (186-230)||(3993759-3993803)
chr3 (198-230)||(51412042-51412074)
chr3 (187-230)||(12236599-12236642)
chr3 (187-230)||(28951866-28951909)
chr3 (187-226)||(38507648-38507687)
chr3 (196-230)||(34407142-34407176)
chr3 (187-229)||(41430834-41430876)
chr3 (198-247)||(4045669-4045718)
chr3 (190-227)||(23237365-23237402)
chr3 (190-227)||(24890076-24890113)
chr3 (187-219)||(6284877-6284909)
chr3 (187-230)||(9624982-9625026)
chr3 (187-230)||(14868684-14868728)
chr3 (191-227)||(16999932-16999968)
chr3 (204-232)||(27119293-27119321)
chr3 (187-230)||(27183733-27183777)
chr3 (187-230)||(43774184-43774228)
chr3 (194-226)||(46969005-46969037)
chr3 (187-230)||(47191372-47191416)
chr3 (187-230)||(52030120-52030164)
[»] chr2 (30 HSPs)
chr2 (187-250)||(22355083-22355146)
chr2 (187-246)||(38807881-38807940)
chr2 (187-249)||(25463299-25463361)
chr2 (187-250)||(34107274-34107337)
chr2 (187-230)||(34376542-34376585)
chr2 (187-250)||(39334913-39334976)
chr2 (190-232)||(19064942-19064984)
chr2 (187-232)||(19352866-19352911)
chr2 (197-250)||(44132595-44132648)
chr2 (186-246)||(18065253-18065313)
chr2 (187-227)||(36277757-36277797)
chr2 (193-245)||(40471159-40471211)
chr2 (187-230)||(2057481-2057524)
chr2 (187-230)||(5772860-5772903)
chr2 (187-230)||(14307746-14307789)
chr2 (187-230)||(39118393-39118436)
chr2 (187-229)||(218108-218150)
chr2 (198-232)||(26975348-26975382)
chr2 (188-230)||(36386165-36386207)
chr2 (190-230)||(3037674-3037715)
chr2 (190-227)||(6496442-6496479)
chr2 (186-247)||(11001768-11001829)
chr2 (187-232)||(41288089-41288134)
chr2 (193-246)||(42211526-42211579)
chr2 (187-230)||(11133075-11133119)
chr2 (202-230)||(13294436-13294464)
chr2 (219-247)||(27464138-27464166)
chr2 (187-230)||(29664602-29664646)
chr2 (198-246)||(29713125-29713173)
chr2 (187-227)||(32677335-32677375)
[»] scaffold1808 (1 HSPs)
scaffold1808 (187-232)||(883-928)
[»] scaffold1343 (1 HSPs)
scaffold1343 (190-230)||(929-969)
[»] scaffold0126 (1 HSPs)
scaffold0126 (187-230)||(25013-25056)
[»] scaffold0070 (1 HSPs)
scaffold0070 (186-230)||(12563-12608)
[»] scaffold0809 (1 HSPs)
scaffold0809 (187-230)||(4857-4901)
[»] scaffold0036 (1 HSPs)
scaffold0036 (187-230)||(25025-25069)


Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 28188849 - 28188603
Alignment:
Q  20 agaattgcaagtatatatgtacaaatgtcttgtttatgattacttctttaacattttcatgt--aaataattgtggccaattagtcccttacaaaaaata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||    
T  28188849 agaattgcaagtatatatgtacaaatgtcttgtttatgattacttctttaacattttcatgtaaaaaaaattgtggccaattagtcccttacaaaaaata 28188750  T
Q  118 atatcaaag--------------attttcatatgaatgataaactagtttctaacacattacaagaacaaacaattaatccatgtgagcataactcagtt 203  Q
    |||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| ||||||    
T  28188749 atatcaaagattacttctttaacattttcatatgaatgataaactagtttctaacacattacaagaacaaacaactattccatgtgaacataattcagtt 28188650  T
Q  204 ggcagggacatgcattgttatatgcagagattgagattcgaactcca 250  Q
    || ||| | ||||||||||||||| ||||||||||||||||||||||    
T  28188649 ggtaggaatatgcattgttatatgtagagattgagattcgaactcca 28188603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 38040267 - 38040327
Alignment:
Q  188 tgagcataactcagttggcagggacatgcattgttatatgcagagattgagattcgaactc 248  Q
    |||||||| |||||||||||||||||||||||||||||||||| | | ||| |||||||||    
T  38040267 tgagcatagctcagttggcagggacatgcattgttatatgcaggggtcgaggttcgaactc 38040327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 11246589 - 11246546
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  11246589 gtgagcatagctcagttggcagggacatgcattgttatatgcag 11246546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 25660912 - 25660955
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||    
T  25660912 gtgagcatagctcagttggcagggatatgcattgttatatgcag 25660955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 35813337 - 35813294
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| |||||||| |||||||||||||||||||||||||    
T  35813337 gtgagcatagctcagttgacagggacatgcattgttatatgcag 35813294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 41405186 - 41405141
Alignment:
Q  184 catgtgagcataactcagttggcagggacatgcattgttatatgca 229  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||||    
T  41405186 catgtgagcatagttcagttgacagggacatgcattgttatatgca 41405141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 42781679 - 42781646
Alignment:
Q  197 ctcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||||||||||||||||||||||||||||    
T  42781679 ctcagttggcagggacatgcattgttatatgcag 42781646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 6447576 - 6447532
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||    
T  6447576 gtgagcataactcagttggcagggacaatgcattattatatgcag 6447532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 17557030 - 17557070
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatg 227  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  17557030 gtgagcctaactcagttggcagagacatgcattgttatatg 17557070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 36116977 - 36116929
Alignment:
Q  182 tccatgtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||| |||||||||||||| |||||||||||||| |||| |||||||||    
T  36116977 tccaagtgagcataactcaattggcagggacatgtattgctatatgcag 36116929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 3536031 - 3535992
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatat 226  Q
    |||||||||  |||||||||||||||||||||||||||||    
T  3536031 gtgagcatagttcagttggcagggacatgcattgttatat 3535992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 9409041 - 9409002
Alignment:
Q  192 cataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  9409041 cataactcagttggcagggacaatgcattgttatatgcag 9409002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 20186866 - 20186909
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||  ||||||||||||||||||||||| ||||||||||    
T  20186866 gtgagcattgctcagttggcagggacatgcattattatatgcag 20186909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 22867087 - 22867044
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||| || ||||||||||| ||||||||||    
T  22867087 gtgagcataactcagttgacaaggacatgcattattatatgcag 22867044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 36742062 - 36742019
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| |||||||||||| |||||| ||||||||||||||    
T  36742062 gtgagcatagctcagttggcagagacatgaattgttatatgcag 36742019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 40250272 - 40250229
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||    
T  40250272 gtgagcatagctcagttggcagtaacatgcattgttatatgcag 40250229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 28537135 - 28537177
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgca 229  Q
    |||||||||||||| ||| || |||||||||||||||||||||    
T  28537135 gtgagcataactcaattgacatggacatgcattgttatatgca 28537177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 31934970 - 31934912
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagagattgagattcgaa 245  Q
    |||| |||||||||||||| |||   ||||||| |||||||||||||||||| ||||||    
T  31934970 gtgaacataactcagttggtaggacaatgcattattatatgcagagattgaggttcgaa 31934912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 1463869 - 1463914
Alignment:
Q  186 tgtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    |||||||||| |||||||||||||||| ||||||| ||||||||||    
T  1463869 tgtgagcatagctcagttggcagggacaatgcattattatatgcag 1463914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 9963415 - 9963476
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcagagattgagattcgaact 247  Q
    ||||| ||| |||||||||||||||| |||||||||||||||||| | ||| | ||||||||    
T  9963415 gtgagtatagctcagttggcagggacaatgcattgttatatgcaggggttggggttcgaact 9963476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 29561645 - 29561686
Alignment:
Q  189 gagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||| |||| || ||||||||||||||||||||||||||    
T  29561645 gagcatagctcatttcgcagggacatgcattgttatatgcag 29561686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 6806736 - 6806692
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||| ||| ||||||||||||||||||    
T  6806736 gtgagcatagctcagttggcagagacaatgcattgttatatgcag 6806692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 17178314 - 17178278
Alignment:
Q  190 agcataactcagttggcagggacatgcattgttatat 226  Q
    |||||| |||||||| |||||||||||||||||||||    
T  17178314 agcatagctcagttgacagggacatgcattgttatat 17178278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 31004225 - 31004181
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcaga 231  Q
    |||||||||||||| |||| |||||||| |||||||||| |||||    
T  31004225 gtgagcataactcaattggtagggacatacattgttataggcaga 31004181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 31280638 - 31280602
Alignment:
Q  190 agcataactcagttggcagggacatgcattgttatat 226  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  31280638 agcatagctcagttggcagggacatgcattattatat 31280602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 31556821 - 31556861
Alignment:
Q  190 agcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||| |||| || ||||||||||||||||||||||||||    
T  31556821 agcatagctcacttagcagggacatgcattgttatatgcag 31556861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 230
Target Start/End: Original strand, 31907662 - 31907694
Alignment:
Q  198 tcagttggcagggacatgcattgttatatgcag 230  Q
    |||||| ||||||||||||||||||||||||||    
T  31907662 tcagtttgcagggacatgcattgttatatgcag 31907694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 38040176 - 38040144
Alignment:
Q  198 tcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||| ||||||||||||||||||||||    
T  38040176 tcagttggcaaggacatgcattgttatatgcag 38040144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 42432014 - 42432070
Alignment:
Q  193 ataactcagttggcagggacatgcattgttatatgcagagattgagattcgaactcc 249  Q
    |||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||    
T  42432014 ataactcagttggcagggacatgcattgttatatgcagggattggggttcgaactcc 42432070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 56956 - 56913
Alignment:
Q  186 tgtgagcataactcagttggcagggacatgcattgttatatgca 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  56956 tgtgagcataactcagttggcagggacatgcattgttatatgca 56913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 36045830 - 36045892
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagagattgagattcgaactcc 249  Q
    ||||||||| |||| ||| ||||||||||||||||||||||||| | ||||||||||||||||    
T  36045830 gtgagcatagctcaattgacagggacatgcattgttatatgcaggggttgagattcgaactcc 36045892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 17431378 - 17431422
Alignment:
Q  188 tgagcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  17431378 tgagcataactcagttgacagggacatgcattgttatatgcagag 17431422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 20610738 - 20610782
Alignment:
Q  186 tgtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  20610738 tgtgagcatagctcagttggcagggacatgcattgttatatgcag 20610782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 49039540 - 49039497
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  49039540 gtgagcatagctcagttggcagggacatgcattgttatatgcag 49039497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 38657540 - 38657602
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagagattgagattcgaactcc 249  Q
    ||||||||  |||||||||||||||||||||||||||||||||| || |||  ||||||||||    
T  38657540 gtgagcatggctcagttggcagggacatgcattgttatatgcagggactgaagttcgaactcc 38657602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 4419781 - 4419738
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||| ||| |||||||||||||||||||||    
T  4419781 gtgagcataactcagttgtcagagacatgcattgttatatgcag 4419738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 227
Target Start/End: Complemental strand, 12585649 - 12585614
Alignment:
Q  192 cataactcagttggcagggacatgcattgttatatg 227  Q
    ||||||||||||||||||||||||||||||||||||    
T  12585649 cataactcagttggcagggacatgcattgttatatg 12585614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 12796666 - 12796709
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||||||||||||||||| |||| |||||||||||||||    
T  12796666 gtgagcataactcagttggcaggaacatacattgttatatgcag 12796709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 20166316 - 20166359
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||| || ||||||||||||||||||||||||||||||||||    
T  20166316 gtgagcgtagctcagttggcagggacatgcattgttatatgcag 20166359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 41492593 - 41492550
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||    
T  41492593 gtgagcatagctcagttggcagggacatgcattattatatgcag 41492550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 25714551 - 25714501
Alignment:
Q  184 catgtgagcataactcagttggcagggacatgcattgttatatgcagagat 234  Q
    |||||||| |||||| |||||||||| | ||||||||||||||||||||||    
T  25714551 catgtgagtataacttagttggcaggaatatgcattgttatatgcagagat 25714501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 53621200 - 53621245
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||||    
T  53621200 gtgagcataattcagttgacagggacatgcattgttatatacagag 53621245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 1589253 - 1589209
Alignment:
Q  186 tgtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||| |||||||||| | |||||||||||||||||||||    
T  1589253 tgtgagcatagctcagttggcggtgacatgcattgttatatgcag 1589209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 14504725 - 14504685
Alignment:
Q  190 agcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  14504725 agcataactcagttggcaagaacatgcattgttatatgcag 14504685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 36008274 - 36008318
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||    
T  36008274 gtgagcatagctcagttggcagggacaatgcattgttatatgcag 36008318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 44449562 - 44449522
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatg 227  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  44449562 gtgagcataactcagttagcaggaacatgcattgttatatg 44449522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 48512198 - 48512242
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||    
T  48512198 gtgagcatagctcagttggcagggacaatgcattgttatatgcag 48512242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 53335308 - 53335352
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcaga 231  Q
    |||||||||| ||||||||||| ||||||||| ||||||||||||    
T  53335308 gtgagcataattcagttggcagcgacatgcatcgttatatgcaga 53335352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 9084759 - 9084802
Alignment:
Q  188 tgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    |||||||| |||||||||||||||| ||||||||||||||||||    
T  9084759 tgagcatagctcagttggcagggacaatgcattgttatatgcag 9084802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 15853822 - 15853861
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatat 226  Q
    |||||||||| |||||||||||| ||||||||||||||||    
T  15853822 gtgagcataattcagttggcaggaacatgcattgttatat 15853861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 27921896 - 27921939
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||||    
T  27921896 gtgagcatagctcagttggtagggacatgcattattatatgcag 27921939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 43050028 - 43049985
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| |||||||| |||| ||||||||||||||||||||    
T  43050028 gtgagcatagctcagttgacaggaacatgcattgttatatgcag 43049985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 49319393 - 49319436
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||||| ||||||||||| ||||||||||    
T  49319393 gtgagcatagctcagttggcatggacatgcattattatatgcag 49319436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 54854274 - 54854231
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||||||||||||||||  ||||||||||    
T  54854274 gtgagcatagctcagttggcagggacatgcataattatatgcag 54854231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 230
Target Start/End: Complemental strand, 37997932 - 37997898
Alignment:
Q  196 actcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||||||||||||| |||||||||||||||    
T  37997932 actcagttggcagggacattcattgttatatgcag 37997898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 8241465 - 8241424
Alignment:
Q  190 agcataactcagttggcagggacatgcattgttatatgcaga 231  Q
    ||||||||||||||| |||| ||||||||| |||||||||||    
T  8241465 agcataactcagttgtcaggaacatgcattattatatgcaga 8241424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 30152127 - 30152172
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcaga 231  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||    
T  30152127 gtgagcatagctcagttggcaggaacaatgcattgttatatgcaga 30152172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 42758260 - 42758215
Alignment:
Q  185 atgtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||||| ||||||| | ||||||||||||| ||||||||||    
T  42758260 atgtgagcatagctcagtttgtagggacatgcattattatatgcag 42758215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 56531333 - 56531288
Alignment:
Q  186 tgtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    |||||||||| ||||||||||| |||| ||||||||||||||||||    
T  56531333 tgtgagcatagctcagttggcaaggacaatgcattgttatatgcag 56531288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 2565260 - 2565304
Alignment:
Q  187 gtgagcataactcagttggcagggaca-tgcattgttatatgcag 230  Q
    ||||||||| |||||||| |||||||| |||||||||||||||||    
T  2565260 gtgagcatagctcagttgacagggacaatgcattgttatatgcag 2565304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 12820501 - 12820457
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||| ||| ||||||||||||||||||    
T  12820501 gtgagcatagctcagttggcagagacaatgcattgttatatgcag 12820457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 20925093 - 20925132
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatg 227  Q
    |||||||||||||||||| |||||||||| |||||||||||    
T  20925093 gtgagcataactcagttg-cagggacatggattgttatatg 20925132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 28520827 - 28520783
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||    
T  28520827 gtgagcatagctcagttggcagggacaatgcattattatatgcag 28520783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 30565364 - 30565396
Alignment:
Q  197 ctcagttggcagggacatgcattgttatatgca 229  Q
    ||||||||||||||||||| |||||||||||||    
T  30565364 ctcagttggcagggacatgtattgttatatgca 30565396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 39449400 - 39449440
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatg 227  Q
    |||| |||||||||| ||||||||||||||||| |||||||    
T  39449400 gtgaacataactcagctggcagggacatgcattattatatg 39449440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 53815695 - 53815739
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||    
T  53815695 gtgagcatagctcagttggcagggacaatgcattattatatgcag 53815739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 18179328 - 18179371
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  18179328 gtgagcataactcagttggcagggacatgcattgttatatgcag 18179371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 9768904 - 9768861
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  9768904 gtgagcatagctcagttggcagggacatgcattgttatatgcag 9768861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 18003816 - 18003859
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  18003816 gtgagcatagctcagttggcagggacatgcattgttatatgcag 18003859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 28417372 - 28417328
Alignment:
Q  188 tgagcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||    
T  28417372 tgagcataactcagttggcagagacatgcattcttatatgcagag 28417328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 47141898 - 47141858
Alignment:
Q  190 agcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  47141898 agcataactcagttgacagggacatgcattgttatatgcag 47141858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 47645890 - 47645846
Alignment:
Q  188 tgagcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    |||||||| |||||||||||| |||||||||||||||||||||||    
T  47645890 tgagcatagctcagttggcagagacatgcattgttatatgcagag 47645846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 2903116 - 2903077
Alignment:
Q  193 ataactcagttggcagggacatgcattgttatatgcagag 232  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  2903116 ataactcagttgccagggacatgcattgttatatgcagag 2903077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 42908771 - 42908814
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||| || ||||||||||||||||||||||||||||||||||    
T  42908771 gtgagcttagctcagttggcagggacatgcattgttatatgcag 42908814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 43327010 - 43327053
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||    
T  43327010 gtgagcataactcagtttgcagggacatgtattgttatatgcag 43327053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 52961177 - 52961134
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||    
T  52961177 gtgagcatagctcagttggcaaggacatgcattgttatatgcag 52961134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 1580829 - 1580871
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgca 229  Q
    |||||||||||||||||||||||||||| || |||||||||||    
T  1580829 gtgagcataactcagttggcagggacatacaatgttatatgca 1580871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 4605936 - 4605894
Alignment:
Q  188 tgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||||||||||| ||| |||||||||||||||||||||    
T  4605936 tgagcataactcagttgacagagacatgcattgttatatgcag 4605894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 7015782 - 7015720
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagagattgagattcgaactcc 249  Q
    ||||||||| |||||||||| |||||||||||||||||||| || |  |||| ||||||||||    
T  7015782 gtgagcatagctcagttggctgggacatgcattgttatatgtaggggctgaggttcgaactcc 7015720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 9769674 - 9769616
Alignment:
Q  188 tgagcataactcagttggcagggacatgcattgttatatgcagagattgagattcgaac 246  Q
    |||||||| ||||||||||||||||||||||| ||||||| || ||||| | |||||||    
T  9769674 tgagcatagctcagttggcagggacatgcattattatatgtagggattggggttcgaac 9769616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 9931087 - 9931129
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgca 229  Q
    ||||||||||||||||| ||||||||||||||| |||||||||    
T  9931087 gtgagcataactcagttagcagggacatgcattattatatgca 9931129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 5862128 - 5862173
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    |||| |||| ||||||||||||||||||||||||||||||| ||||    
T  5862128 gtgaacatagctcagttggcagggacatgcattgttatatgtagag 5862173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 9004346 - 9004395
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagagattg 236  Q
    ||||||||| ||||||||||||||||||  |||||||||||||| |||||    
T  9004346 gtgagcatagctcagttggcagggacatatattgttatatgcagggattg 9004395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 1721139 - 1721183
Alignment:
Q  186 tgtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||    
T  1721139 tgtgagcatagctcagttggtaggaacatgcattgttatatgcag 1721183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 9527425 - 9527469
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||    
T  9527425 gtgagcatagctcagttggcagggacaatgcattgttatatgcag 9527469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 18646691 - 18646731
Alignment:
Q  190 agcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||| ||||||||||||| ||||||||    
T  18646691 agcataactcagttggcatggacatgcattgtgatatgcag 18646731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 230
Target Start/End: Complemental strand, 50199564 - 50199528
Alignment:
Q  194 taactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||| ||||||||||||||||||||||||    
T  50199564 taactcagttggtagggacatgcattgttatatgcag 50199528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 3341827 - 3341788
Alignment:
Q  191 gcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  3341827 gcatagctcagttggcagggacatgcattattatatgcag 3341788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 7906421 - 7906378
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||  |||||||| ||||||||||||||||||||||||    
T  7906421 gtgagcatagttcagttggtagggacatgcattgttatatgcag 7906378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 9410422 - 9410364
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagagattgagattcgaac 246  Q
    |||||||||  |||||||||| |||||||||| ||||||||||| | |||||||||||||    
T  9410422 gtgagcatagttcagttggcaaggacatgcatagttatatgcag-ggttgagattcgaac 9410364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 37262200 - 37262157
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||  ||||||||||||||||||| |||||||||||||    
T  37262200 gtgagcatagttcagttggcagggacatgcgttgttatatgcag 37262157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 42801879 - 42801938
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagagattgagattcgaac 246  Q
    |||| |||| |||||||| ||| ||||||||||||||||||||||| ||| | |||||||    
T  42801879 gtgaacatagctcagttgacagagacatgcattgttatatgcagaggttggggttcgaac 42801938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 43020611 - 43020654
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||| ||||||||||||||||||| ||||||||||    
T  43020611 gtgagcatagctcggttggcagggacatgcattattatatgcag 43020654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 46670939 - 46670896
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||| |||||| |||| |||||||||||||||||||||    
T  46670939 gtgagcataattcagttagcagtgacatgcattgttatatgcag 46670896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 5684115 - 5684165
Alignment:
Q  180 aatccatgtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||| ||| |||||| |||||||||||| |||||||||| ||||||||||    
T  5684115 aatccctgtaagcatagctcagttggcagagacatgcattattatatgcag 5684165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 33176197 - 33176155
Alignment:
Q  188 tgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||    
T  33176197 tgagcatagctcagttggtagggatatgcattgttatatgcag 33176155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 47939292 - 47939250
Alignment:
Q  189 gagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||| |||||||||||||||| ||||||||||||||||||    
T  47939292 gagcatagctcagttggcagggacaatgcattgttatatgcag 47939250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 3553377 - 3553336
Alignment:
Q  186 tgtgagcataactcagttggcagggacatgcattgttatatg 227  Q
    |||||||||||||  ||||||||||||||||||| |||||||    
T  3553377 tgtgagcataacttggttggcagggacatgcattattatatg 3553336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 227
Target Start/End: Original strand, 3569055 - 3569084
Alignment:
Q  198 tcagttggcagggacatgcattgttatatg 227  Q
    ||||||||||||||||||||||||||||||    
T  3569055 tcagttggcagggacatgcattgttatatg 3569084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 13870178 - 13870133
Alignment:
Q  186 tgtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    |||||||||| |||||||||||||||| ||||||| ||||||||||    
T  13870178 tgtgagcatagctcagttggcagggacaatgcattattatatgcag 13870133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 13941330 - 13941379
Alignment:
Q  198 tcagttggcagggacatgcattgttatatgcagagattgagattcgaact 247  Q
    |||||||||| |||||||||||||||||||||| | | ||| ||||||||    
T  13941330 tcagttggcaaggacatgcattgttatatgcagggttcgaggttcgaact 13941379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 195043 - 195087
Alignment:
Q  186 tgtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||| || ||||||||||||||||||||||  ||||||||||    
T  195043 tgtgagcgtagctcagttggcagggacatgcataattatatgcag 195087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 3140358 - 3140398
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatg 227  Q
    ||||| |||||||||||| ||| ||||||||||||||||||    
T  3140358 gtgagtataactcagttgacagagacatgcattgttatatg 3140398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 29491469 - 29491513
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||    
T  29491469 gtgagcatagctcagttggcagggacaatgcattattatatgcag 29491513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 33694542 - 33694582
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatg 227  Q
    |||||||||||| |||||||||||| ||||||| |||||||    
T  33694542 gtgagcataacttagttggcagggatatgcattattatatg 33694582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 39238715 - 39238759
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||    
T  39238715 gtgagcatagctcagttggcagggacaatgcattattatatgcag 39238759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 40678822 - 40678866
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||    
T  40678822 gtgagcatagctcagttggcagggacaatgcattattatatgcag 40678866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 47763481 - 47763437
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||    
T  47763481 gtgagcatagctcagttggcagggacaatgcattattatatgcag 47763437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 49632293 - 49632333
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatg 227  Q
    |||||| || |||| ||||||||||||||||||||||||||    
T  49632293 gtgagcgtagctcaattggcagggacatgcattgttatatg 49632333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 50575911 - 50575943
Alignment:
Q  197 ctcagttggcagggacatgcattgttatatgca 229  Q
    ||||||||| |||||||||||||||||||||||    
T  50575911 ctcagttggaagggacatgcattgttatatgca 50575943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 51917597 - 51917553
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcaga 231  Q
    ||||||||| |||||||||||  |||||||||| |||||||||||    
T  51917597 gtgagcatagctcagttggcatagacatgcattattatatgcaga 51917553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 52833202 - 52833158
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    |||||| ||||||||||||||||||| ||||||| ||||||||||    
T  52833202 gtgagcctaactcagttggcagggacaatgcattattatatgcag 52833158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 1513486 - 1513546
Alignment:
Q  186 tgtgagcataactcagttggcagggacatgcattgttatatgcagagattgagattcgaac 246  Q
    ||||||||||| |||||||||||||||||||||||||||||| || | ||||| |||||||    
T  1513486 tgtgagcataaatcagttggcagggacatgcattgttatatgtaggggttgaggttcgaac 1513546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 17305485 - 17305443
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgca 229  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  17305485 gtgagcatagctcagttggcagggacatgcattgttatatgca 17305443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 35498401 - 35498441
Alignment:
Q  190 agcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  35498401 agcataactcagttggcagggacatgcattattatatgcag 35498441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 8766906 - 8766863
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||||||||||||| |||||| ||||||||    
T  8766906 gtgagcataactcagttggcagggacattcattgtcatatgcag 8766863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 230
Target Start/End: Original strand, 24427367 - 24427406
Alignment:
Q  191 gcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  24427367 gcataactcagttggcagagacatgcattgttatatgcag 24427406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 38032950 - 38032911
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatat 226  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  38032950 gtgaacataactcagttggcagggacatgcattgttatat 38032911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 43209401 - 43209444
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||| |||||||||||||||||| ||||||||||||||||||||    
T  43209401 gtgaacataactcagttggcaggaacatgcattgttatatgcag 43209444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 43635588 - 43635631
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||||||||||||||||  ||||||||||||||||||||    
T  43635588 gtgagcataactcagttggcagaaacatgcattgttatatgcag 43635631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 45198193 - 45198134
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagagattgagattcgaac 246  Q
    ||||||||||||||||||| |||   ||||||| |||||||||| |||||||||||||||    
T  45198193 gtgagcataactcagttggtaggataatgcattattatatgcagtgattgagattcgaac 45198134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 8147281 - 8147239
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgca 229  Q
    ||||||||| |||| ||||||||||||||||||||||||||||    
T  8147281 gtgagcatagctcaattggcagggacatgcattgttatatgca 8147239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 32534679 - 32534637
Alignment:
Q  188 tgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||||||||||||||||||||| ||| |||||||||||    
T  32534679 tgagcataactcagttggcagggacatacatggttatatgcag 32534637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 43712407 - 43712369
Alignment:
Q  188 tgagcataactcagttggcagggacatgcattgttatat 226  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  43712407 tgagcataactcagttggtagggacatgcattgttatat 43712369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 44409201 - 44409243
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgca 229  Q
    ||||||||||||||||| ||||||||||||||| |||||||||    
T  44409201 gtgagcataactcagttagcagggacatgcattattatatgca 44409243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 7392401 - 7392356
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||||    
T  7392401 gtgagcatagctcaattggcaggaacatgcattgttatatgcagag 7392356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 23799306 - 23799343
Alignment:
Q  193 ataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||| |||||||||||||||||||||    
T  23799306 ataactcagttggcagagacatgcattgttatatgcag 23799343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 3246581 - 3246541
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatg 227  Q
    ||||||||| |||||||| ||||||||||||||||||||||    
T  3246581 gtgagcatagctcagttgacagggacatgcattgttatatg 3246541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 14772430 - 14772394
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgtta 223  Q
    |||||||||||||||||||||| ||||||||||||||    
T  14772430 gtgagcataactcagttggcagagacatgcattgtta 14772394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 15222882 - 15222846
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgtta 223  Q
    |||||||||||||||||||||| ||||||||||||||    
T  15222882 gtgagcataactcagttggcagagacatgcattgtta 15222846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 21285449 - 21285405
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||    
T  21285449 gtgagcatagctcagttggcagggacaatgcattgttatatgcag 21285405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 35195846 - 35195886
Alignment:
Q  190 agcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  35195846 agcatagctcagttggcagggacatgcattattatatgcag 35195886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 2639626 - 2639665
Alignment:
Q  194 taactcagttggcagggacatgcattgttatatgcagaga 233  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  2639626 taactcagtttgcaaggacatgcattgttatatgcagaga 2639665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 7465466 - 7465509
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||    
T  7465466 gtgagcatagctcagttggcagagacatgcattattatatgcag 7465509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 32814827 - 32814870
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||||    
T  32814827 gtgagcatagctcagttggtagggacatgcattattatatgcag 32814870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 37410576 - 37410533
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||    
T  37410576 gtgagcatagctcagttggtaaggacatgcattgttatatgcag 37410533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 10020559 - 10020521
Alignment:
Q  192 cataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  10020559 catagctcagttgacagggacatgcattgttatatgcag 10020521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 19924777 - 19924811
Alignment:
Q  197 ctcagttggcagggacatgcattgttatatgcaga 231  Q
    ||||||||||||||||||||||| |||||||||||    
T  19924777 ctcagttggcagggacatgcattattatatgcaga 19924811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 20527526 - 20527481
Alignment:
Q  186 tgtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    |||||| ||| |||||||||||||||| ||||||||||||||||||    
T  20527526 tgtgagtatagctcagttggcagggacaatgcattgttatatgcag 20527481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 230
Target Start/End: Complemental strand, 32309229 - 32309200
Alignment:
Q  201 gttggcagggacatgcattgttatatgcag 230  Q
    ||||||||||||||||||||||||||||||    
T  32309229 gttggcagggacatgcattgttatatgcag 32309200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 38451861 - 38451906
Alignment:
Q  186 tgtgagcataactcagttggcagggaca-tgcattgttatatgcag 230  Q
    |||||||||| |||||||| |||||||| |||||||||||||||||    
T  38451861 tgtgagcatagctcagttgacagggacaatgcattgttatatgcag 38451906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 41012677 - 41012636
Alignment:
Q  186 tgtgagcataactcagttggcagggacatgcattgttatatg 227  Q
    |||||||||| |||| |||| |||||||||||||||||||||    
T  41012677 tgtgagcatagctcaattggtagggacatgcattgttatatg 41012636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 14818461 - 14818417
Alignment:
Q  187 gtgagcataactcagttggcagggaca-tgcattgttatatgcag 230  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||    
T  14818461 gtgagcatagctcagttggcagggacagtgcattattatatgcag 14818417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 15265459 - 15265415
Alignment:
Q  187 gtgagcataactcagttggcagggaca-tgcattgttatatgcag 230  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||    
T  15265459 gtgagcatagctcagttggcagggacagtgcattattatatgcag 15265415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 31475936 - 31475892
Alignment:
Q  187 gtgagcataactcagttggcagggaca-tgcattgttatatgcag 230  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||    
T  31475936 gtgagcatagctcagttggcagggacattgcattattatatgcag 31475892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 41139086 - 41139130
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||    
T  41139086 gtgagcatagctcagttggcagggacaatgcattattatatgcag 41139130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 20858475 - 20858435
Alignment:
Q  190 agcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20858475 agcataactcagttggcagggacatgcattgttatatgcag 20858435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 9422833 - 9422872
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatat 226  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9422833 gtgagcataactcagttggcagggacatgcattgttatat 9422872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 22730797 - 22730754
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  22730797 gtgagcataactcagttggcagagacatgcattgttatatgcag 22730754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 34524875 - 34524918
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  34524875 gtgagcatagctcagttggcagggacatgcattgttatatgcag 34524918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 4844144 - 4844186
Alignment:
Q  188 tgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  4844144 tgagtataactcagttggcagggacatgcattgttatatgcag 4844186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 8309165 - 8309206
Alignment:
Q  188 tgagcataactcagttggcagggacatgcattgttatatgca 229  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  8309165 tgagcatagctcagttggcagggacatgcattgttatatgca 8309206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 9031766 - 9031809
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||| |||| ||||||||||||||||||||||||||||||||||    
T  9031766 gtgaacatagctcagttggcagggacatgcattgttatatgcag 9031809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 30833018 - 30833060
Alignment:
Q  188 tgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  30833018 tgagcatagttcagttggcagggacatgcattgttatatgcag 30833060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 17347260 - 17347297
Alignment:
Q  192 cataactcagttggcagggacatgcattgttatatgca 229  Q
    |||||||||||||||||||| |||||||||||||||||    
T  17347260 cataactcagttggcagggatatgcattgttatatgca 17347297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 30905488 - 30905541
Alignment:
Q  192 cataactcagttggcagggacatgcattgttatatgcagagattgagattcgaa 245  Q
    |||||||||||||| ||| ||||||||||||||||| || ||||||| ||||||    
T  30905488 cataactcagttggtaggaacatgcattgttatatgtagggattgaggttcgaa 30905541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 2945595 - 2945639
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||    
T  2945595 gtgagcatagctcagttggcagggacaatgcattgttatatgcag 2945639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 31639141 - 31639181
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatg 227  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  31639141 gtgagcataactcagttgacagggacacgcattgttatatg 31639181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 32394028 - 32394076
Alignment:
Q  190 agcataactcagttggcagggacatgcattgttatatgcagagattgag 238  Q
    |||||||||||||||||||||||||| |||||  ||||||||| |||||    
T  32394028 agcataactcagttggcagggacatgtattgtcttatgcagaggttgag 32394076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 8175996 - 8176039
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| |||||||| ||| |||||||||||||||||||||    
T  8175996 gtgagcatagctcagttgacagagacatgcattgttatatgcag 8176039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 10455742 - 10455785
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||  |||||||||||| ||||||||||||||||||||    
T  10455742 gtgagcatagttcagttggcaggaacatgcattgttatatgcag 10455785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 17305516 - 17305559
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||| |||||||||||||| ||||||||||||| ||||||||||    
T  17305516 gtgaacataactcagttggtagggacatgcattattatatgcag 17305559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 30668279 - 30668236
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||||||  |||||||||| ||||||||||    
T  30668279 gtgagcataactcagttggcatagacatgcattattatatgcag 30668236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 1488091 - 1488133
Alignment:
Q  190 agcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    |||||| |||| ||||||| |||||||||||||||||||||||    
T  1488091 agcatatctcaattggcagagacatgcattgttatatgcagag 1488133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 17176154 - 17176192
Alignment:
Q  192 cataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  17176154 catagctcagttgacagggacatgcattgttatatgcag 17176192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 230
Target Start/End: Complemental strand, 17751423 - 17751389
Alignment:
Q  196 actcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||| ||||||||||||||||||||||    
T  17751423 actcagttggcatggacatgcattgttatatgcag 17751389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 19135929 - 19135971
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgca 229  Q
    ||||||||| ||| ||||||||||||||||||| |||||||||    
T  19135929 gtgagcatagctcggttggcagggacatgcattattatatgca 19135971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 8253675 - 8253642
Alignment:
Q  197 ctcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||||| ||||||||||||||||||||||    
T  8253675 ctcagttggcatggacatgcattgttatatgcag 8253642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 14949114 - 14949053
Alignment:
Q  188 tgagcataactcagttggcagggacatgcattgttatatgcagagattgagattcgaactcc 249  Q
    |||||||||||||||||||||  |||| |||| |||||||||||| | | | ||||||||||    
T  14949114 tgagcataactcagttggcagaaacatacattattatatgcagaggtcggggttcgaactcc 14949053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 33947383 - 33947428
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    ||||||||| ||||||||| | ||||||||||||||| ||||||||    
T  33947383 gtgagcatatctcagttggtatggacatgcattgttacatgcagag 33947428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 9064865 - 9064909
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||    
T  9064865 gtgagcatagctcagttggcagggacaatgcattattatatgcag 9064909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 14948878 - 14948834
Alignment:
Q  188 tgagcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    |||||||| |||||||| ||||||||| |||| ||||||||||||    
T  14948878 tgagcatagctcagttgacagggacatacattattatatgcagag 14948834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 14981798 - 14981754
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||    
T  14981798 gtgagcatagctcagttggcagggacaatgcattattatatgcag 14981754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 31411156 - 31411116
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatg 227  Q
    |||||||||||||||||| |||| ||||||||| |||||||    
T  31411156 gtgagcataactcagttgacaggaacatgcattattatatg 31411116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 4520 - 4563
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  4520 gtgagcatagctcagttggcagggacatgcattgttatatgcag 4563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 4540 - 4583
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  4540 gtgagcatagctcagttggcagggacatgcattgttatatgcag 4583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 34128 - 34085
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  34128 gtgagcatagctcagttggcagggacatgcattgttatatgcag 34085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 7345428 - 7345471
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  7345428 gtgagcataactcagttggcagggacatgcattattatatgcag 7345471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 216242 - 216197
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||    
T  216242 gtgagcatagctcagttggcagggacatacattgttatatgcagag 216197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 220457 - 220412
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  220457 gtgagcatagctcagttggcagggacatgcaatgttatatgcagag 220412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 689612 - 689567
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  689612 gtgagcatagctcagttggcagggacatgcaatgttatatgcagag 689567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 692802 - 692757
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||    
T  692802 gtgagcatagctcagttggcagggacatacattgttatatgcagag 692757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 697011 - 696966
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||    
T  697011 gtgagcatagctcagttggcagggacatacattgttatatgcagag 696966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 729865 - 729820
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||    
T  729865 gtgagcatagctcagttggcagggacatacattgttatatgcagag 729820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 734080 - 734035
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  734080 gtgagcatagctcagttggcagggacatgcaatgttatatgcagag 734035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 853760 - 853715
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||    
T  853760 gtgagcatagctcagttggcagggacatacattgttatatgcagag 853715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 857976 - 857931
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  857976 gtgagcatagctcagttggcagggacatgcaatgttatatgcagag 857931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 14011134 - 14011090
Alignment:
Q  186 tgtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  14011134 tgtgagcatagttcagttggcagggacatgcattgttatatgcag 14011090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 26657855 - 26657899
Alignment:
Q  186 tgtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  26657855 tgtgagcatagctcagttggtagggacatgcattgttatatgcag 26657899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 37989135 - 37989087
Alignment:
Q  188 tgagcataactcagttggcagggacatgcattgttatatgcagagattg 236  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||    
T  37989135 tgagcataactcagttaacagggacatgcattgttataggcagagattg 37989087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 18577113 - 18577156
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||| |||||||||| ||||||||||||||    
T  18577113 gtgagcataactcagttgacagggacatgtattgttatatgcag 18577156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 39432423 - 39432380
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||    
T  39432423 gtgagcatagctcagttggcagggacatgcaatgttatatgcag 39432380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 16808455 - 16808413
Alignment:
Q  188 tgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||| ||||||||||||||| ||||||||||    
T  16808455 tgagcataactcagttagcagggacatgcattattatatgcag 16808413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 2696532 - 2696576
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||    
T  2696532 gtgagcataactcagttggcagggacaatgcattattatatgcag 2696576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 10292351 - 10292411
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcagagattgagattcgaac 246  Q
    ||||||||| |||||||||||||||| ||||||| |||||||||| |  ||||||||||||    
T  10292351 gtgagcatagctcagttggcagggacaatgcattattatatgcaggggctgagattcgaac 10292411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 38790669 - 38790625
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||    
T  38790669 gtgagcataactcagttggcagggacaatgcattattatatgcag 38790625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 4955078 - 4955035
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||    
T  4955078 gtgagcataactcaattggcagagacatgtattgttatatgcag 4955035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 29937210 - 29937253
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||| ||||||||| ||||||||||||||    
T  29937210 gtgagcatagctcagttggtagggacatgtattgttatatgcag 29937253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 12986472 - 12986530
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagagattgagattcgaa 245  Q
    ||||||||| ||||||||||||| | |||| |||||||||| |||| ||| ||||||||    
T  12986472 gtgagcatatctcagttggcaggtaaatgcgttgttatatgtagaggttgtgattcgaa 12986530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 230
Target Start/End: Complemental strand, 22847344 - 22847314
Alignment:
Q  200 agttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||||||||||||||||    
T  22847344 agttggcagggacatgcattgttatatgcag 22847314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 2800018 - 2800062
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||    
T  2800018 gtgagcatagctcagttggcagggacaatgcattattatatgcag 2800062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 14012611 - 14012655
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    |||||||||  ||||||||||||||| ||||||||||||||||||    
T  14012611 gtgagcatagttcagttggcagggacaatgcattgttatatgcag 14012655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 17467277 - 17467321
Alignment:
Q  186 tgtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||||| ||||| || |||| ||||||||||    
T  17467277 tgtgagcataactcagttggtagggatatacattattatatgcag 17467321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 21133615 - 21133571
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||||||||||||||||| || ||||||| ||||||||||    
T  21133615 gtgagcataactcagttggcaggaacaatgcattattatatgcag 21133571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 29653056 - 29653116
Alignment:
Q  189 gagcataactcagttggcagggacatgcattgttatatgcagagattgagattcgaactcc 249  Q
    |||||||  ||| |||||||||||||||||| |||||||||| ||| | | ||||||||||    
T  29653056 gagcatagttcaattggcagggacatgcattattatatgcagggatcgtggttcgaactcc 29653116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 36593204 - 36593252
Alignment:
Q  197 ctcagttggcagggacatgcattgttatatgcagagattgagattcgaa 245  Q
    ||||||||| |||||||||||||||||||| ||||| ||| | ||||||    
T  36593204 ctcagttggtagggacatgcattgttatatacagaggttggggttcgaa 36593252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 16874285 - 16874242
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  16874285 gtgagcatagctcagttggcagggacatgcattgttatatgcag 16874242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 24130559 - 24130602
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  24130559 gtgagcataactcagttggcagggacatacattgttatatgcag 24130602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 12143509 - 12143460
Alignment:
Q  180 aatccatgtgagcataactcagttggcagggacatgcattgttatatgca 229  Q
    ||||| ||||| |||| |||||||||||||||||||||||||||||||||    
T  12143509 aatccttgtgaacatagctcagttggcagggacatgcattgttatatgca 12143460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 30745826 - 30745785
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgc 228  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  30745826 gtgagcatagctcagttggcagggacatgcattgttatatgc 30745785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 3461819 - 3461779
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatg 227  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  3461819 gtgagcataactcagttgacagggacatgcattgttatatg 3461779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 4010114 - 4010070
Alignment:
Q  186 tgtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  4010114 tgtgagcatagctcagttggtagggacatgcattgttatatgcag 4010070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 31108856 - 31108812
Alignment:
Q  186 tgtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||||||||||||||||||  ||||||||||    
T  31108856 tgtgagcataactcagttggcagggacatgcataattatatgcag 31108812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 3973302 - 3973345
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
T  3973302 gtgagcatagctcagttggtagggacatgcattgttatatgcag 3973345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 3996574 - 3996531
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
T  3996574 gtgagcatagctcagttggtagggacatgcattgttatatgcag 3996531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 6951885 - 6951842
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||| |||||||||||||| ||||||||||    
T  6951885 gtgagcataactcagttgacagggacatgcattattatatgcag 6951842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 19137619 - 19137662
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||    
T  19137619 gtgagcatagctcagttggcaggaacatgcattgttatatgcag 19137662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 23305747 - 23305786
Alignment:
Q  188 tgagcataactcagttggcagggacatgcattgttatatg 227  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  23305747 tgagcataactcagttggtagggacatgcattgttatatg 23305786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 24160623 - 24160580
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||||||| |||||||| ||||||||||||    
T  24160623 gtgagcataactcagttggcagagacatgcactgttatatgcag 24160580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 33533205 - 33533243
Alignment:
Q  189 gagcataactcagttggcagggacatgcattgttatatg 227  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  33533205 gagcataactcagttggcagagacatgcattgttatatg 33533243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 51017791 - 51017833
Alignment:
Q  188 tgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||| ||| ||||||||||||||||||||||||||||||||||    
T  51017791 tgagtatagctcagttggcagggacatgcattgttatatgcag 51017833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 40160735 - 40160776
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgc 228  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  40160735 gtgagcatagctcaattggcagggacatgcattgttatatgc 40160776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 3993803 - 3993759
Alignment:
Q  186 tgtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||| ||||||||  ||||||||||||||||||||||||    
T  3993803 tgtgagcatagctcagttgagagggacatgcattgttatatgcag 3993759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 51412074 - 51412042
Alignment:
Q  198 tcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||||||||||||||||||    
T  51412074 tcagttggcagggacatgcattgttatatgcag 51412042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 12236599 - 12236642
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||| || ||||||||||||||||||||||| ||||||||||    
T  12236599 gtgagcgtagctcagttggcagggacatgcattattatatgcag 12236642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 28951866 - 28951909
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||||||||||||||||  ||||||||| ||||||||||    
T  28951866 gtgagcataactcagttggcagatacatgcattattatatgcag 28951909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 38507648 - 38507687
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatat 226  Q
    ||||||||| ||||||||||||||||||||||| ||||||    
T  38507648 gtgagcatagctcagttggcagggacatgcattattatat 38507687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 230
Target Start/End: Complemental strand, 34407176 - 34407142
Alignment:
Q  196 actcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||||||||| ||||||||||    
T  34407176 actcagttggcagggacatgcattattatatgcag 34407142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 41430876 - 41430834
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgca 229  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||    
T  41430876 gtgagcataactcagttggtagggatatgcattattatatgca 41430834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 4045718 - 4045669
Alignment:
Q  198 tcagttggcagggacatgcattgttatatgcagagattgagattcgaact 247  Q
    ||||||| ||||||||||||||||||||||||| | | ||| ||||||||    
T  4045718 tcagttgacagggacatgcattgttatatgcaggggtcgaggttcgaact 4045669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 23237365 - 23237402
Alignment:
Q  190 agcataactcagttggcagggacatgcattgttatatg 227  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  23237365 agcatagctcagttggcagggacatgcattattatatg 23237402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 24890076 - 24890113
Alignment:
Q  190 agcataactcagttggcagggacatgcattgttatatg 227  Q
    ||||||||||||||| || |||||||||||||||||||    
T  24890076 agcataactcagttgacaaggacatgcattgttatatg 24890113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 6284877 - 6284909
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcatt 219  Q
    |||||||||| ||||||||||||||||||||||    
T  6284877 gtgagcataattcagttggcagggacatgcatt 6284909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 9624982 - 9625026
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||    
T  9624982 gtgagcatagctcagttggcagggacaatgcattattatatgcag 9625026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 14868684 - 14868728
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||    
T  14868684 gtgagcatagctcagttggcagggacaatgcattattatatgcag 14868728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 16999932 - 16999968
Alignment:
Q  191 gcataactcagttggcagggacatgcattgttatatg 227  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  16999932 gcataactctgttggcagggacatgcattattatatg 16999968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 27119293 - 27119321
Alignment:
Q  204 ggcagggacatgcattgttatatgcagag 232  Q
    |||||||||||||||||||||||||||||    
T  27119293 ggcagggacatgcattgttatatgcagag 27119321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 27183777 - 27183733
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||    
T  27183777 gtgagcatagctcagttggcagggacaatgcattattatatgcag 27183733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 43774184 - 43774228
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||||    
T  43774184 gtgagtatagctcagttggcagggacaatgcattgttatatgcag 43774228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 46969005 - 46969037
Alignment:
Q  194 taactcagttggcagggacatgcattgttatat 226  Q
    ||||||||||||||| |||||||||||||||||    
T  46969005 taactcagttggcagagacatgcattgttatat 46969037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 47191372 - 47191416
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||    
T  47191372 gtgagcatagctcagttggcagggacaatgcattattatatgcag 47191416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 52030120 - 52030164
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    |||||||||||||||||||||||||| ||| ||| ||||||||||    
T  52030120 gtgagcataactcagttggcagggacaatgtattattatatgcag 52030164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 22355083 - 22355146
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagagattgagattcgaactcca 250  Q
    ||||||||| ||||||||||| |||||||||||||||| ||||| | ||||| |||||||||||    
T  22355083 gtgagcatagctcagttggcaaggacatgcattgttatgtgcaggggttgagtttcgaactcca 22355146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 38807881 - 38807940
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagagattgagattcgaac 246  Q
    ||||| ||||||||||||||||||||||||||  |||||||||| || ||||||||||||    
T  38807881 gtgagtataactcagttggcagggacatgcataattatatgcagggaatgagattcgaac 38807940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 25463361 - 25463299
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagagattgagattcgaactcc 249  Q
    ||||||||||| || ||||||||||||| ||||||||||| ||| ||||||| ||||||||||    
T  25463361 gtgagcataacccaattggcagggacattcattgttatatacagggattgaggttcgaactcc 25463299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 34107274 - 34107337
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagagattgagattcgaactcca 250  Q
    ||||||||| ||||||||||||||||||| ||  |||||||||| | ||||| |||||||||||    
T  34107274 gtgagcatagctcagttggcagggacatgtataattatatgcaggggttgaggttcgaactcca 34107337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 34376542 - 34376585
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||| |||| |||||||||||||||||||||||||||||||||    
T  34376542 gtgagtataattcagttggcagggacatgcattgttatatgcag 34376585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 39334976 - 39334913
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagagattgagattcgaactcca 250  Q
    ||||||||||||||||||||||||||||||||| |||||| ||| |  || | |||||||||||    
T  39334976 gtgagcataactcagttggcagggacatgcattattatatacaggggctggggttcgaactcca 39334913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 19064984 - 19064942
Alignment:
Q  190 agcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    ||||||||||| |||||||||||||||||||||||||| ||||    
T  19064984 agcataactcatttggcagggacatgcattgttatatgtagag 19064942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 19352866 - 19352911
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    |||| ||||||||||||| ||| |||||||||||||||||||||||    
T  19352866 gtgaacataactcagttgacagagacatgcattgttatatgcagag 19352911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 44132648 - 44132595
Alignment:
Q  197 ctcagttggcagggacatgcattgttatatgcagagattgagattcgaactcca 250  Q
    |||||||||||| ||||||||||||||||||||||| | | | |||||||||||    
T  44132648 ctcagttggcagagacatgcattgttatatgcagaggtcggggttcgaactcca 44132595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 18065253 - 18065313
Alignment:
Q  186 tgtgagcataactcagttggcagggacatgcattgttatatgcagagattgagattcgaac 246  Q
    |||||||||| ||||||||| || | ||||||||||||||||||| | ||||| |||||||    
T  18065253 tgtgagcatagctcagttggtagaggcatgcattgttatatgcaggggttgaggttcgaac 18065313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 36277797 - 36277757
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatg 227  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  36277797 gtgagcatagctcagttggcagtgacatgcattgttatatg 36277757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 40471159 - 40471211
Alignment:
Q  193 ataactcagttggcagggacatgcattgttatatgcagagattgagattcgaa 245  Q
    |||||||||||| |||||||||||||| |||||||||| | ||| ||||||||    
T  40471159 ataactcagttgacagggacatgcattattatatgcaggggttgggattcgaa 40471211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 2057481 - 2057524
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||||||||| || |||||||||||||||    
T  2057481 gtgagcatagctcagttggcagggatatacattgttatatgcag 2057524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 5772860 - 5772903
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| ||||||||||| ||||||| ||||||||||||||    
T  5772860 gtgagcatagctcagttggcaaggacatgtattgttatatgcag 5772903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 14307789 - 14307746
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||  ||||||||| ||||||||||||||||||||||||    
T  14307789 gtgagcatggctcagttggtagggacatgcattgttatatgcag 14307746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 39118393 - 39118436
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||| |||||||||||| |||||||| |||||||||||||||    
T  39118393 gtgagcgtaactcagttggtagggacatacattgttatatgcag 39118436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 218108 - 218150
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgca 229  Q
    |||||||||| | | ||||||||||||||||||||||||||||    
T  218108 gtgagcataatttatttggcagggacatgcattgttatatgca 218150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 26975382 - 26975348
Alignment:
Q  198 tcagttggcagggacatgcattgttatatgcagag 232  Q
    ||||||||||||||||||||||| |||||||||||    
T  26975382 tcagttggcagggacatgcattgctatatgcagag 26975348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 36386207 - 36386165
Alignment:
Q  188 tgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||    
T  36386207 tgagcatagctcagttggtagggatatgcattgttatatgcag 36386165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 3037715 - 3037674
Alignment:
Q  190 agcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  3037715 agcataactcagttggctgggacaatgcattgttatatgcag 3037674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 6496442 - 6496479
Alignment:
Q  190 agcataactcagttggcagggacatgcattgttatatg 227  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  6496442 agcatagctcagttggaagggacatgcattgttatatg 6496479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 11001829 - 11001768
Alignment:
Q  186 tgtgagcataactcagttggcagggacatgcattgttatatgcagagattgagattcgaact 247  Q
    ||||||||||  ||||||| ||| |||||||||| |||||||||||| | | ||||||||||    
T  11001829 tgtgagcataggtcagttgacagagacatgcattattatatgcagaggtcgggattcgaact 11001768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 41288134 - 41288089
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    ||||| |||||||||||||||| ||||  |||||||||||||||||    
T  41288134 gtgagtataactcagttggcagagacaaacattgttatatgcagag 41288089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 42211526 - 42211579
Alignment:
Q  193 ataactcagttggcagggacatgcattgttatatgcagagattgagattcgaac 246  Q
    |||| ||||||||||| |||||||||||||||||  |||||||||  |||||||    
T  42211526 ataattcagttggcagtgacatgcattgttatatatagagattgaagttcgaac 42211579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 11133075 - 11133119
Alignment:
Q  187 gtgagcataactcagttggcagggaca-tgcattgttatatgcag 230  Q
    ||||||||| ||||||||| ||||||| |||||||||||||||||    
T  11133075 gtgagcatagctcagttggtagggacaatgcattgttatatgcag 11133119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 13294464 - 13294436
Alignment:
Q  202 ttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||||||||||||||    
T  13294464 ttggcagggacatgcattgttatatgcag 13294436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 247
Target Start/End: Complemental strand, 27464166 - 27464138
Alignment:
Q  219 tgttatatgcagagattgagattcgaact 247  Q
    |||||||||||||||||||||||||||||    
T  27464166 tgttatatgcagagattgagattcgaact 27464138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 29664602 - 29664646
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||||    
T  29664602 gtgagcatagctcaattggcagggacaatgcattgttatatgcag 29664646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 29713173 - 29713125
Alignment:
Q  198 tcagttggcagggacatgcattgttatatgcagagattgagattcgaac 246  Q
    |||||||||| |||||| ||||||||||||||| ||||| | |||||||    
T  29713173 tcagttggcacggacatacattgttatatgcagggattggggttcgaac 29713125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 32677335 - 32677375
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatg 227  Q
    |||||||||||||||||| |||| | |||||||||||||||    
T  32677335 gtgagcataactcagttgacaggaatatgcattgttatatg 32677375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1808 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1808
Description:

Target: scaffold1808; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 928 - 883
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcagag 232  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||    
T  928 gtgagcataactcagttgtcagggacatacattgttatatgcagag 883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1343 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1343
Description:

Target: scaffold1343; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 969 - 929
Alignment:
Q  190 agcataactcagttggcagggacatgcattgttatatgcag 230  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  969 agcataactcagttggcaagaacatgcattgttatatgcag 929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 25056 - 25013
Alignment:
Q  187 gtgagcataactcagttggcagggacatgcattgttatatgcag 230  Q
    ||||||||| |||||||||||| |||||||| ||||||||||||    
T  25056 gtgagcatatctcagttggcagagacatgcaatgttatatgcag 25013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 12563 - 12608
Alignment:
Q  186 tgtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    |||||||||| |||||||||||||||| ||||||| ||||||||||    
T  12563 tgtgagcatagctcagttggcagggacaatgcattattatatgcag 12608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 4901 - 4857
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||    
T  4901 gtgagcatagctcagttggcagggacaatgcattattatatgcag 4857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 25025 - 25069
Alignment:
Q  187 gtgagcataactcagttggcagggac-atgcattgttatatgcag 230  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||||    
T  25025 gtgagcatagctcagttggcagggacaatgcattattatatgcag 25069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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