View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12701_high_26 (Length: 215)
Name: NF12701_high_26
Description: NF12701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12701_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 33843083 - 33842898
Alignment:
| Q |
14 |
gatgaaacatagaaattaatggcaacaattaggccaattcgagaaggcacctgtcttctaagaaatggagtaagattagaacttttgtttattaacttgt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33843083 |
gatgaaacatagaaattaatggcaacaattaggccaattcgagaaaggacgtgtcttctaagaaatggagtaagattagaacttttgtttattaacttgt |
33842984 |
T |
|
| Q |
114 |
ttgattaatcattcacatgttacaaccttaatataacacatcaataagtaaccaccttcctatattaactaataatttcataaaact |
200 |
Q |
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| T |
33842983 |
ttgattattcattcacatgttacaaccttaatataacacatcaataagtaactacctt-ctataacaactaataatttcataaaact |
33842898 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 200
Target Start/End: Original strand, 521547 - 521710
Alignment:
| Q |
37 |
aacaattaggccaattcgagaaggcacctgtcttctaagaaatggagtaagattagaacttttgtttattaacttgtttgattaatcattcacatgttac |
136 |
Q |
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| T |
521547 |
aacaattatcccaattcgagaaggaacatgtctcctaagaaagagaggaagagtagaacttttgtttattactttacttcattattcattcacacattac |
521646 |
T |
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| Q |
137 |
aaccttaatataacacatcaataagtaaccaccttcctatattaactaataatttcataaaact |
200 |
Q |
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| T |
521647 |
aaccttaatataacacaccaataagtaactaacttcctataactactaataacttcataaaact |
521710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 13017768 - 13017661
Alignment:
| Q |
71 |
ctaagaaatggagtaagattagaacttttgtttattaactt-gtttgattaa--tcattcacatgttacaaccttaatataacacatcaataagtaacca |
167 |
Q |
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||||||||||||| |||| | ||| |||||| ||||||||| | ||||||| ||||||||| |||||||||||||||||||| ||||||||||| | |
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| T |
13017768 |
ctaagaaatggagaaagactggaatttttgtctattaactttgcttgattatattcattcacaa--tacaaccttaatataacacaccaataagtaacta |
13017671 |
T |
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| Q |
168 |
ccttcctata |
177 |
Q |
| |
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||||| |||| |
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| T |
13017670 |
ccttcttata |
13017661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 31466548 - 31466703
Alignment:
| Q |
22 |
atagaaattaatggcaacaattaggccaattcgagaaggcacctgtcttctaagaaatggagtaagattagaacttttgtttattaacttgtttgattaa |
121 |
Q |
| |
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||||||||||| | ||||||| |||||||||||||| || | ||| |||||||| |||| |||| |||||||||| |||||||| ||| ||||||| |
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| T |
31466548 |
atagaaattaacagatacaattatcccaattcgagaagggacatctctcctaagaaagggaggaagactagaacttttatttattaatttgcttgattat |
31466647 |
T |
|
| Q |
122 |
tcattcacatgttacaaccttaatataacacatcaataagtaaccaccttcctata |
177 |
Q |
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||||| ||| |||||| |||||||||||||| ||||||||||| | ||||||||| |
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|
| T |
31466648 |
tcatttacacattacaatcttaatataacacaccaataagtaactaacttcctata |
31466703 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 33738516 - 33738691
Alignment:
| Q |
22 |
atagaaattaatggcaacaattaggccaattcgagaaggcacctgtcttctaag-aaatggagtaagattagaacttttgtttattaacttgtttgatta |
120 |
Q |
| |
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||||||||||| | |||||||| ||||||| |||||| || | ||| |||| ||| |||| |||| ||||||||||||||||||||||| ||||||| |
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| T |
33738516 |
atagaaattaacagtaacaattatcccaattcaagaagggacatctctcttaaggaaagggaggaagactagaacttttgtttattaacttgcttgatta |
33738615 |
T |
|
| Q |
121 |
atcattcacatgttacaaccttaatataacacatcaataagtaaccaccttcctatattaactaataatttcataaaact |
200 |
Q |
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| ||||||| ||||||||||||||||||| | ||||||||||| |||||| ||| |||||||| ||||||||||| |
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| T |
33738616 |
tttattcacacattacaaccttaatataacataccaataagtaactaccttcatat----actaataacttcataaaact |
33738691 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 47 - 200
Target Start/End: Original strand, 6212849 - 6213002
Alignment:
| Q |
47 |
ccaattcgagaaggcacctgtcttctaagaaatggagtaagattagaacttttgtttattaacttgtttgattaatcattcacatgttacaaccttaata |
146 |
Q |
| |
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|||||||||||||| || | ||| |||||||| |||| |||| ||||||||||||||||||| || || |||| | ||| ||| |||||| ||||||| |
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| T |
6212849 |
ccaattcgagaagggacatctctcctaagaaagggaggaagactagaacttttgtttattaatttacttcattatttatttacacattacaatcttaata |
6212948 |
T |
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| Q |
147 |
taacacatcaataagtaaccaccttcctatattaactaataatttcataaaact |
200 |
Q |
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||||||| |||||| |||| | ||||||||| ||||||||| ||||||||||| |
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| T |
6212949 |
taacacaccaataaataactaacttcctataacaactaataacttcataaaact |
6213002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 4007974 - 4008152
Alignment:
| Q |
22 |
atagaaattaatggcaacaattaggccaattcgagaaggcacctgtcttctaagaaatggagtaagattagaacttttgtttattaacttgtttgattaa |
121 |
Q |
| |
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|||||||||| | | |||||||| ||||||| ||||| || |||||||||||||| | || ||||||||||| |||||||||||||| || | |
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| T |
4007974 |
atagaaattagtagtaacaattatcccaattcaggaaggaacatgtcttctaagaaaggaagaaagattagaaccgttgtttattaactttctttgtcct |
4008073 |
T |
|
| Q |
122 |
tcattcacatgttacaaccttaatataacacatcaataagtaaccaccttcctatattaactaataatttcataaaact |
200 |
Q |
| |
|
||||||||| |||||||| |||||||||||| |||| | |||| ||||||||||| |||||||||||||||||||| |
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| T |
4008074 |
tcattcacacattacaaccataatataacacaccaatgaataactaccttcctataactactaataatttcataaaact |
4008152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 14234417 - 14234243
Alignment:
| Q |
27 |
aattaatggcaacaattaggccaattcgagaaggcacctgtcttctaagaaatggagtaagattagaacttttgtttattaactt-gtttgattaatcat |
125 |
Q |
| |
|
||||||||| |||||| | | ||||| |||||| || ||||| |||||||| |||| |||| || ||| ||||||||||| || | ||||||| |||| |
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| T |
14234417 |
aattaatggtaacaatcatccaaattctagaagggacatgtctcctaagaaagggagaaagactaaaacgtttgtttattacttttgcttgattattcat |
14234318 |
T |
|
| Q |
126 |
tcacatgttacaaccttaatataacacatcaataagtaaccaccttcctatattaactaataatttcataaaact |
200 |
Q |
| |
|
| | | |||||| |||||||||||||| ||||||||||| || |||||||| ||||||| ||||||||||| |
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|
| T |
14234317 |
ttatacattacaatcttaatataacacaccaataagtaactacattcctataactactaatagcttcataaaact |
14234243 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 39631539 - 39631650
Alignment:
| Q |
90 |
tagaacttttgtttattaacttgtttgattaatcattcacatgttacaaccttaa-tataacacatcaataagtaaccaccttcctatattaactaataa |
188 |
Q |
| |
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|||||||||| ||||||||| ||||| | | ||||||||| ||||||| |||| ||||||||| |||||| |||| ||||| ||||| |||||||| |
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| T |
39631539 |
tagaacttttatttattaacctgtttaaacattcattcacacattacaactttaaatataacacaccaataaataactaccttgctataactactaataa |
39631638 |
T |
|
| Q |
189 |
tttcataaaact |
200 |
Q |
| |
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||| ||||||| |
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|
| T |
39631639 |
cttcttaaaact |
39631650 |
T |
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