View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12701_high_3 (Length: 443)
Name: NF12701_high_3
Description: NF12701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12701_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 123 - 429
Target Start/End: Complemental strand, 33181038 - 33180732
Alignment:
| Q |
123 |
tctctatttttatccttcttcttcctttaaaataaaattcataaagggttgaataagctatagacatgaatagaggtgttgttcaaagctctccagtgca |
222 |
Q |
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| T |
33181038 |
tctctatttttatccttcttcttcctttaaaacaaaattcataaagggttgaataagctataggcatgaatagaggtgttgttcaaagctctccagtgca |
33180939 |
T |
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| Q |
223 |
acaaatgatggctagtaaccctaattggtggaacatcaataacatgaggccaccatctccacaacctcctcctttattttcatctccttctaactttctc |
322 |
Q |
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| T |
33180938 |
acaaatgatggctagtaaccctaattggtggaacatcaataacatgaggccaccatctccacaacctcctcctttattttcatctccttctaactttctc |
33180839 |
T |
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| Q |
323 |
aaccctaattatacaccaacttcatcttttcttcctttttcttcatggcatgaaaatcatcaagagcttcccgaaccatggagtcaacaactcatgtatc |
422 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33180838 |
aaccctaattatgcaccaacttcatcttttcttcctttttcttcatggcatgaaaatcatcaagagcttcccgaaccatggagtcaacaactcatgtatc |
33180739 |
T |
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| Q |
423 |
tctctct |
429 |
Q |
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||||||| |
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| T |
33180738 |
tctctct |
33180732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 33181158 - 33181073
Alignment:
| Q |
3 |
caaagggtgtggtgctccccctacttaatcaacttcaataagacctctcaaagtttctacaaagacattgtttaggcaagaacatc |
88 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33181158 |
caaagggtgtggtgcttcccctacttaatcaacctcaataagacctctcaaagtttctacaaagacattgtttaggcaagaacatc |
33181073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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