View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12701_high_5 (Length: 423)
Name: NF12701_high_5
Description: NF12701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12701_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 20 - 390
Target Start/End: Original strand, 54505056 - 54505422
Alignment:
| Q |
20 |
ccgtcatcttcaccttcagacgagtcaccttcaccggcaccgtccccaagttcatctggtagtaaaggtggtggtgctggccatggattcttggaagttt |
119 |
Q |
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| T |
54505056 |
ccgtcatcttcaccttcagacgagtcaccttcaccggcaccgtccccaagttcatctggtagtaaaggtggtggtgctggccatggattcttggaagttt |
54505155 |
T |
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| Q |
120 |
caatcgctatgatgatgttcttaattttctagattatgtttacgtatttgcattgatgtcttttgaattaagctttgtgactacatgcataaatattatg |
219 |
Q |
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| T |
54505156 |
caatcgctatgatgatgttcttaattttctagattatgtttacgtatttgcattgatgtcttttgaattaagctttgtgactacatgcataaatattatg |
54505255 |
T |
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| Q |
220 |
caatattgtgtgtggggtcaaagtcaagcacattttcattttgctttcatgtttccttaattttcattttcatgtagtagttagtttcttgtgtggttga |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
54505256 |
caatattgtgtgtggggtcaaagtcaagcacattttcattttgctttcatgtttccttaattttcattttcatgtag----tagtttcttgtgtggttga |
54505351 |
T |
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| Q |
320 |
ttagaatgattaatttcgcccttgaactacaacggttggtcttacttttccttaattttcattttcgtggg |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54505352 |
ttagaatgattaatttcgcccttgaactacaacggttggtcttacttttccttaattttcattttcgtggg |
54505422 |
T |
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