View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12701_low_1 (Length: 837)
Name: NF12701_low_1
Description: NF12701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12701_low_1 |
 | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0479 (2 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 646; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 107 - 819
Target Start/End: Complemental strand, 33811867 - 33811158
Alignment:
| Q |
107 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
206 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33811867 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa |
33811770 |
T |
|
| Q |
207 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccttcaggtggacc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33811769 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
33811670 |
T |
|
| Q |
307 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811669 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
33811570 |
T |
|
| Q |
407 |
tatgtgagtgaggattgtgttgtggtgtggtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttat |
506 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811569 |
tatgtgagtgaggattgtgttgtggtgtg-tttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttat |
33811471 |
T |
|
| Q |
507 |
tttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttgctgacatggtagaatttttaccaccgcaagctatta |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811470 |
tttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttactgacatggtagaatttttaccaccgcaagctatta |
33811371 |
T |
|
| Q |
607 |
ttcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattgttactattgtggctggaaaccaacaattctccccctccagccaaag |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811370 |
ttcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaacaattctccccctccagccaaag |
33811271 |
T |
|
| Q |
707 |
ggaaactatccttagattagtttggggttgctgctatgcctgcagcctctttacaaaactctatcttctcttttgatagagcttttgtcatcatatctgc |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33811270 |
ggaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgc |
33811171 |
T |
|
| Q |
807 |
tccattgtcattg |
819 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
33811170 |
tccgttgtcattg |
33811158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 107 - 819
Target Start/End: Complemental strand, 33816785 - 33816076
Alignment:
| Q |
107 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
206 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33816785 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa |
33816688 |
T |
|
| Q |
207 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccttcaggtggacc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33816687 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
33816588 |
T |
|
| Q |
307 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816587 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
33816488 |
T |
|
| Q |
407 |
tatgtgagtgaggattgtgttgtggtgtggtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttat |
506 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816487 |
tatgtgagtgaggattgtgttgtggtgtg-tttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttat |
33816389 |
T |
|
| Q |
507 |
tttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttgctgacatggtagaatttttaccaccgcaagctatta |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816388 |
tttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttactgacatggtagaatttttaccaccgcaagctatta |
33816289 |
T |
|
| Q |
607 |
ttcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattgttactattgtggctggaaaccaacaattctccccctccagccaaag |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816288 |
ttcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaacaattctccccctccagccaaag |
33816189 |
T |
|
| Q |
707 |
ggaaactatccttagattagtttggggttgctgctatgcctgcagcctctttacaaaactctatcttctcttttgatagagcttttgtcatcatatctgc |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33816188 |
ggaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgc |
33816089 |
T |
|
| Q |
807 |
tccattgtcattg |
819 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
33816088 |
tccgttgtcattg |
33816076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 107 - 685
Target Start/End: Complemental strand, 33808213 - 33807638
Alignment:
| Q |
107 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
206 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33808213 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacaca--acaaaattttagcgtggaaaa |
33808116 |
T |
|
| Q |
207 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccttcaggtggacc |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33808115 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcaggtggacc |
33808016 |
T |
|
| Q |
307 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33808015 |
taactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaactc |
33807916 |
T |
|
| Q |
407 |
tatgtgagtgaggattgtgttgtggtgtggtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttat |
506 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807915 |
tatgtgagtgaggattgtgttgtggtgt-gtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttggttcttat |
33807817 |
T |
|
| Q |
507 |
tttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttgctgacatggtagaatttttaccaccgcaagctatta |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807816 |
tttccaatccttgctgcaccatctttgacaatagttacccattgccaagtttgtcaatttgttactgacatggtagaatttttaccaccgcaagctatta |
33807717 |
T |
|
| Q |
607 |
ttcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattgttactattgtggctggaaaccaaca |
685 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807716 |
ttcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaaca |
33807638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 6306499 - 6306463
Alignment:
| Q |
70 |
cattagtggttagtatgtggactatttttcttaaaaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6306499 |
cattagtggttagtatgtggactatttttcttaaaaa |
6306463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 285
Target Start/End: Complemental strand, 16698601 - 16698504
Alignment:
| Q |
190 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
285 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| || ||||||| | ||||||| | ||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
16698601 |
aattttagtgtggaaatccttctcaatgtgagaaagggaaaaattatgggacccttggacctcttaaaacttccactataatgataatgggaatacaa |
16698504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 285
Target Start/End: Original strand, 22763905 - 22764002
Alignment:
| Q |
190 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
285 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| || ||||||||||||||||| | |||||||||| | | ||||||| ||||||||||||||| |
|
|
| T |
22763905 |
aattttagcatggaaaaccttctcaatatgagaaagggaaaaaccacgggaccattgggcctcttaaaacttatgctataatgataatgggaatacaa |
22764002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 107 - 502
Target Start/End: Complemental strand, 50603403 - 50603003
Alignment:
| Q |
107 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
206 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
50603403 |
tgttgggaaatgccagtacaatttctctcctccgtgaactcaaaatagacactttagcgaaaacgtaaaatgacacacaataaaattttagcgtggaaaa |
50603304 |
T |
|
| Q |
207 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccttcaggtggacc |
306 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
50603303 |
ccttctcaatgtgagtaagaaaaaaccacggaacccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcacctttagatggacc |
50603204 |
T |
|
| Q |
307 |
taactatgtatctcaatttgtagatacaactctc--acaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaac |
404 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50603203 |
taactatatatctcaatttgtagatacaactctcatacaaattggctcactatatttttctct--cactcttatgaggaactttctatttttctctcaac |
50603106 |
T |
|
| Q |
405 |
tctatgtgagtgaggattg-----tgttgtggtgtggtttcattgctgaaactcttctctatttatagagggttttgaaccgtgtgcattaaatgcttgg |
499 |
Q |
| |
|
||| ||||||||||||||| |||||||||||| || | |||||||| ||||||||||||||||||| | |||||||| ||||||||||||||| |
|
|
| T |
50603105 |
tctgtgtgagtgaggattgtgctatgttgtggtgtgtttgctttgctgaagctcttctctatttatagagagaaatgaaccgtaagcattaaatgcttgg |
50603006 |
T |
|
| Q |
500 |
ttc |
502 |
Q |
| |
|
||| |
|
|
| T |
50603005 |
ttc |
50603003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 106 - 357
Target Start/End: Original strand, 54967209 - 54967477
Alignment:
| Q |
106 |
atgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt |
194 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |||||| || | ||||| |
|
|
| T |
54967209 |
atgttgggaaatgcctgcataatttccctcctccgtcaactcaaaataggcact--agcggaaacgtgaaataaaagcgtaatgacaca-aagagaattt |
54967305 |
T |
|
| Q |
195 |
tagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctctt--aaatctccactataataataatgggaatacaa-atctt |
290 |
Q |
| |
|
|||||||||||||||||||||| |||| || |||||||||||||||||| | ||||||| ||| ||||||||||| ||||||||||||||| | ||| |
|
|
| T |
54967306 |
tagcgtggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaacaactt |
54967405 |
T |
|
| Q |
291 |
caccttcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
357 |
Q |
| |
|
|||| | ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
54967406 |
cacccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
54967477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 106 - 285
Target Start/End: Original strand, 44782523 - 44782713
Alignment:
| Q |
106 |
atgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt |
194 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||| || | ||||| |
|
|
| T |
44782523 |
atgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaattt |
44782619 |
T |
|
| Q |
195 |
tagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
285 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| |||||||||||||||| | ||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
44782620 |
tagcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttggacctcttaaaacttccactataatgataatgggaatacaa |
44782713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 721 - 819
Target Start/End: Original strand, 54967873 - 54967971
Alignment:
| Q |
721 |
gattagtttggggttgctgctatgcctgcagcctctttacaaaactctatcttctcttttgatagagcttttgtcatcatatctgctccattgtcattg |
819 |
Q |
| |
|
||||| |||||||||||||| | || ||||| | ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||| |
|
|
| T |
54967873 |
gattaatttggggttgctgccaatccagcagcttgtttgcaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttctcattg |
54967971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 190 - 357
Target Start/End: Complemental strand, 39298908 - 39298736
Alignment:
| Q |
190 |
aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa-atc |
288 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| ||||||||| |||||||||| | |||||||||| ||||||||||| |||| |||||||||| | | |
|
|
| T |
39298908 |
aattttagtgtgaaaaaccttctcaatgtgatgaaggaaaaatcacgggacccttgtgcctcttaaacttccactataatgataaagggaatacaacaac |
39298809 |
T |
|
| Q |
289 |
ttcaccttcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
357 |
Q |
| |
|
|||||| | ||||||| ||||| ||| | |||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
39298808 |
ttcacccttaggtggatctaactacaatatatctctcaatttgtaaggac-actctcacaaattggctcactat |
39298736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 18556392 - 18556491
Alignment:
| Q |
188 |
aaaattttagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
285 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| ||||||||||| ||||||||||| | |||| |||||||| |
|
|
| T |
18556392 |
aaaattttagcgtggaaaaccttctcaatctgagaaaggcaaaaaaccacgggaccctcgagcctcttaaacttccactataatgacaatgagaatacaa |
18556491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 259 - 363
Target Start/End: Original strand, 31725346 - 31725448
Alignment:
| Q |
259 |
tccactataataataatgggaatacaaatcttcaccttcaggtggacctaactatgtatctcaatttgtagatacaactctcacaaattggctcactata |
358 |
Q |
| |
|
|||| ||||| ||||||| |||||||||||||||| | |||||||||| || |||||||||||||||||| |||| |||||||||||| | |||||| |
|
|
| T |
31725346 |
tccaatataacaataatgagaatacaaatcttcacacttaggtggaccttacgatgtatctcaatttgtag--acaattctcacaaattgattaactata |
31725443 |
T |
|
| Q |
359 |
ttttt |
363 |
Q |
| |
|
||||| |
|
|
| T |
31725444 |
ttttt |
31725448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 190 - 285
Target Start/End: Original strand, 54979933 - 54980031
Alignment:
| Q |
190 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctctt--aaatctccactataataataatgggaatacaa |
285 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| || |||||||||||||||||| | ||||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
54979933 |
aattttagcatggaaaaccttctcaatatgagaaagggaaaaaccacgggacccttgggcctcttaaaaacttccactataatgataatgggaatacaa |
54980031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 285
Target Start/End: Complemental strand, 17645897 - 17645800
Alignment:
| Q |
186 |
acaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | || |||||||||||||| | | ||| ||||||| ||||||||||| |||||| ||||||| |
|
|
| T |
17645897 |
acaaaattttagcgtggaaaaccttctcaatataa--aaaaaaaaaccacgggactcttgagcgtcttaaacttccactataatgataatgacaatacaa |
17645800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 107 - 480
Target Start/End: Original strand, 31151926 - 31152298
Alignment:
| Q |
107 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
206 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
31151926 |
tgttgggaaatgcctgcataatttccctcctctctgaactcaaaataggcactttagcggaaacataaaatgacacacaacaaaattttaatgtggaaaa |
31152025 |
T |
|
| Q |
207 |
ccttctcaatgtgagtaaggaaaa-accacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccttcaggtggac |
305 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
31152026 |
ccttctcaatgtgagtaagaaaaaaaccacgggatccgtaggcctcttaaatctccactataataataatgggaatacaaatcttcaccctcagatggac |
31152125 |
T |
|
| Q |
306 |
ctaactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctctcacactcttatgaggaactctctatttttctctcaact |
405 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31152126 |
ctaactacgtatctaaatttatagatacaactctcacaaattggcttactatatttttctctcacactcttacgaggaactctctatttttctctcaact |
31152225 |
T |
|
| Q |
406 |
ctatgtgagtgaggattgtgttgtggtgtggtttcattgctgaaactcttctctatttatagagggttttgaacc |
480 |
Q |
| |
|
| || || | ||||||||||||||| || | |||||||| ||||||||||||||||||| | |||||||| |
|
|
| T |
31152226 |
cccgaggattgtg--ttgtgttgtggtgtgattgctttgctgaagctcttctctatttatagagagatttgaacc |
31152298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 183 - 366
Target Start/End: Original strand, 1111378 - 1111564
Alignment:
| Q |
183 |
acaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatct-ccactataataataatgggaat |
281 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||| | |||||||||| || ||||| | |||| ||||||||||| | | |||||||||||| |||| |
|
|
| T |
1111378 |
acaacaaaattttagtgtagaaaaccttctgaatgtaaataaggaaaaatcatgggactcataagtctcttaaatctactataataataataatgagaat |
1111477 |
T |
|
| Q |
282 |
acaaatcttcaccttcaggtggacctaactatgtatctcaatttg--tagatacaactctcacaaattggctcactatatttttctc |
366 |
Q |
| |
|
||||| |||||| | | || ||||||||||||||||||||||| |||||| | ||||||||||||| || |||||||||||| |
|
|
| T |
1111478 |
acaaactttcacccttacgtaaacctaactatgtatctcaatttgtatagatatatttctcacaaattggttccttatatttttctc |
1111564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 107 - 285
Target Start/End: Complemental strand, 22981710 - 22981524
Alignment:
| Q |
107 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgt--aaaatga-------cacacaacaaaattttag |
197 |
Q |
| |
|
|||||||||||| | || ||||||||| ||||||||||||||||| |||||| |||||||||||| ||||| | |||| | | |||||||| |
|
|
| T |
22981710 |
tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcac--tagcggaaacgtgaaaaataagcgtaatgacac-agagaattttag |
22981614 |
T |
|
| Q |
198 |
cgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
285 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
22981613 |
cgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaa |
22981524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 190 - 285
Target Start/End: Original strand, 23806787 - 23806884
Alignment:
| Q |
190 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
23806787 |
aattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaa |
23806884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 760 - 819
Target Start/End: Original strand, 22981841 - 22981900
Alignment:
| Q |
760 |
caaaactctatcttctcttttgatagagcttttgtcatcatatctgctccattgtcattg |
819 |
Q |
| |
|
|||||||| ||||| ||||||| ||||| |||||||||||| ||||||||||| |||||| |
|
|
| T |
22981841 |
caaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattg |
22981900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 760 - 819
Target Start/End: Complemental strand, 23806567 - 23806508
Alignment:
| Q |
760 |
caaaactctatcttctcttttgatagagcttttgtcatcatatctgctccattgtcattg |
819 |
Q |
| |
|
|||||||| ||||| ||||||| ||||| |||||||||||| ||||||||||| |||||| |
|
|
| T |
23806567 |
caaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattg |
23806508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 23806698 - 23806761
Alignment:
| Q |
107 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgt |
172 |
Q |
| |
|
|||||||||||| | || ||||||||| ||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
23806698 |
tgttgggaaatgactgcataatttcccccctccgtgaactcaaaacaggcac--tagcggaaacgt |
23806761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 793
Target Start/End: Original strand, 1104988 - 1105101
Alignment:
| Q |
680 |
ccaacaattctccccctccagccaaagggaaactatccttagattagtttggggttgctgctatgcctgcagcctctttacaaaactctatcttctcttt |
779 |
Q |
| |
|
||||||||| || ||||| ||| ||| | ||||||| ||||||||| |||||| |||||| | ||||||| ||||| |||| |||| ||||| ||| |
|
|
| T |
1104988 |
ccaacaattatctccctctagctaaacgaaaactatacttagattaatttgggattgctgtcaagcctgcaattgctttataaaaatctaacttcttttt |
1105087 |
T |
|
| Q |
780 |
tgatagagcttttg |
793 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
1105088 |
tggtagagcttttg |
1105101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 3e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 107 - 322
Target Start/End: Original strand, 29706854 - 29707069
Alignment:
| Q |
107 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaa |
206 |
Q |
| |
|
|||||| ||||||| | ||||||| ||| |||||||||| |||||| |||||||||| ||| ||||||||||||||||||||||||||| | |||||| |
|
|
| T |
29706854 |
tgttggaaaatgcctccataatttctctcatccgtgaacttaaaatatgcactttagcaaaaatgtaaaatgacacacaacaaaattttagtgaggaaaa |
29706953 |
T |
|
| Q |
207 |
ccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccttcaggtggacc |
306 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||| | || |||||||||||||||||||||||||||||| | | ||||||||||| || |||||||| |
|
|
| T |
29706954 |
ccttctcaatatgagtaaggaacaatcacgggactcatagacctcttaaatctccactataataataatggaataaaaaatcttcaccctcgggtggacc |
29707053 |
T |
|
| Q |
307 |
taactatgtatctcaa |
322 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
29707054 |
taactatgtatctcaa |
29707069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 282
Target Start/End: Complemental strand, 27642225 - 27642132
Alignment:
| Q |
190 |
aattttagcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaata |
282 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| |||| ||||| |||||| || | |||||||| |||||||||||||||||||||||| |
|
|
| T |
27642225 |
aattttggcgtgtaaaaccttctcaatgtgagaaaggaaaaaatcacggggtcctcgggtctcttaaacttccactataataataatgggaata |
27642132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 125 - 285
Target Start/End: Original strand, 26516 - 26674
Alignment:
| Q |
125 |
taatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgacacacaacaaaattttagcgtggaaaaccttctcaatgtgagtaa |
224 |
Q |
| |
|
|||| |||||||| |||||||||||||||| |||||||||| ||||||||||| |||| ||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
26516 |
taatctccctccttcgtgaactcaaaatagacactttagcgaaaacgtaaaataacac--aacaaaattttagggtggaaaaccttttcaatgtgagtaa |
26613 |
T |
|
| Q |
225 |
ggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
285 |
Q |
| |
|
|||||||| ||||||||| | |||||||||| |||||| |||| |||| | |||||||| |
|
|
| T |
26614 |
ggaaaaactacgggacccttgggcctcttaaacttccactctaatgataacgagaatacaa |
26674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 1e-31; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 106 - 357
Target Start/End: Original strand, 25857130 - 25857395
Alignment:
| Q |
106 |
atgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt |
194 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||| |||||||||||| ||||||||||| |||| |||||| | ||||| |
|
|
| T |
25857130 |
atgttgggaaatgcctgcataatttccctcctccgtgaacttaaaataggcact--agcggaaacgtgaaatataagcgtaatgacacagag---aattt |
25857224 |
T |
|
| Q |
195 |
tagcgtggaaaaccttctcaatgtgag-taaggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
291 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
25857225 |
tagcgtggaaaaccttctcaatgtgagaaaaggaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
25857324 |
T |
|
| Q |
292 |
accttcaggtggacctaact---atgtatctc--aatttgtagatacaactctcacaaattggctcactat |
357 |
Q |
| |
|
||||| ||||||| || ||| || |||||| |||||||| | ||||||||||||||||||||||| |
|
|
| T |
25857325 |
acctttaggtggatctcactacaatatatctcttaatttgtaaggaacactctcacaaattggctcactat |
25857395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 107 - 285
Target Start/End: Original strand, 4842648 - 4842837
Alignment:
| Q |
107 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaatttt |
195 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| || | |||||| |
|
|
| T |
4842648 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataagtgtaatgacaca-aagagaatttt |
4842744 |
T |
|
| Q |
196 |
agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
285 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||| |||||| | |||||||||| | ||||||||||| ||||| ||||||||| |
|
|
| T |
4842745 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacaggacccttgggcctcttaaaacttccactataatgataataggaatacaa |
4842837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 107 - 357
Target Start/End: Original strand, 4835575 - 4835840
Alignment:
| Q |
107 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatg-acac------aca-acaaaattttagc |
198 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| ||||||||||||||||||| || |||||||| |||| | || ||| | | ||||||||| |
|
|
| T |
4835575 |
tgttgggaaatgcctgcataatttccctcctccatgaactcaaaataggcact--agtggaaacgtgaaatataaacgtaatgacacagagaattttagc |
4835672 |
T |
|
| Q |
199 |
gtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttcacc |
294 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||| | ||||||||||| ||||||||||| ||| | ||||||| |
|
|
| T |
4835673 |
gtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatgcaacaacttcacc |
4835772 |
T |
|
| Q |
295 |
ttcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
357 |
Q |
| |
|
| ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
4835773 |
cttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
4835840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 198 - 367
Target Start/End: Original strand, 8252686 - 8252853
Alignment:
| Q |
198 |
cgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaaatcttcaccttc |
297 |
Q |
| |
|
|||||||||||||||||| |||||||||| | |||||| |||||| ||||||| || || | ||||||||| ||||||||||| ||||| ||| |
|
|
| T |
8252686 |
cgtggaaaaccttctcaacgtgagtaaggta------cgggactcgtaagtctcttaactcctcaatgtaataataacgggaatacaaagcttcatcttt |
8252779 |
T |
|
| Q |
298 |
aggtggac----ctaactatgtatctcaatttgtagatacaactctcacaaattggctcactatatttttctct |
367 |
Q |
| |
|
|| ||||| ||| ||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||| |
|
|
| T |
8252780 |
agatggacttaattaattatgtatctcaatttgtagatacaactatcataaattgactcactatatttttctct |
8252853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 13465046 - 13465145
Alignment:
| Q |
188 |
aaaattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||| |||||| | |||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
13465046 |
aaaattttagcgtggaaaaccttctcaatgtgagaaagggaaaaaccacaggacccttgggcctcttaaaacatccactataatgataatgggaatacaa |
13465145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 721 - 812
Target Start/End: Original strand, 24379927 - 24380018
Alignment:
| Q |
721 |
gattagtttggggttgctgctatgcctgcagcctctttacaaaactctatcttctcttttgatagagcttttgtcatcatatctgctccatt |
812 |
Q |
| |
|
|||||||||||||||||||| | || ||||| | ||| |||||||||||||||||||||||||||| |||||||||||| || |||||||| |
|
|
| T |
24379927 |
gattagtttggggttgctgccaatccagcagcttgtttgcaaaactctatcttctcttttgatagaggttttgtcatcatgtcggctccatt |
24380018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 683 - 818
Target Start/End: Original strand, 4836172 - 4836304
Alignment:
| Q |
683 |
acaattctccccctccagccaaagggaaactatccttagattagtttggggttgctgctatgcctgcagcctctttacaaaactctatcttctcttttga |
782 |
Q |
| |
|
||||||||||||||||||||| |||| || ||||| ||||||||||||||||| | || || ||||| | ||| |||||||||||||||||||| | |
|
|
| T |
4836172 |
acaattctccccctccagccataggggaatg--cctta-attagtttggggttgctaccattccagcagcttgtttgcaaaactctatcttctctttcgg |
4836268 |
T |
|
| Q |
783 |
tagagcttttgtcatcatatctgctccattgtcatt |
818 |
Q |
| |
|
||| | |||||||||||| ||||||||||| ||||| |
|
|
| T |
4836269 |
tagcggttttgtcatcatgtctgctccattctcatt |
4836304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 190 - 285
Target Start/End: Original strand, 27341025 - 27341120
Alignment:
| Q |
190 |
aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
285 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||| | ||||||||| || |||| ||| ||||||| ||||||| |
|
|
| T |
27341025 |
aattttagcgtggaaaaccttctcaatgtaagaaaggaaaaaccacgggacccttgtacctcttaaacttctactacaatgataatggaaatacaa |
27341120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 181 - 285
Target Start/End: Complemental strand, 17845969 - 17845865
Alignment:
| Q |
181 |
acacaacaaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaa |
280 |
Q |
| |
|
|||||| | |||||||| ||||||||||||| ||||||||| ||||||||||||| ||||| | ||||||||| ||||||||||| ||||||| || |
|
|
| T |
17845969 |
acacaagagaattttagagtggaaaaccttcccaatgtgaggaaggaaaaaccacaggacctttggacctcttaaacttccactataatgataatggaaa |
17845870 |
T |
|
| Q |
281 |
tacaa |
285 |
Q |
| |
|
||||| |
|
|
| T |
17845869 |
tacaa |
17845865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 285
Target Start/End: Original strand, 24379370 - 24379467
Alignment:
| Q |
190 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
285 |
Q |
| |
|
||||||| |||||||||||||||||||||||| || ||||||||||||||| | | |||||||||| | ||||||||||| ||||| ||||||||| |
|
|
| T |
24379370 |
aattttaacgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggatctttgggcctcttaaaacttccactataatgataataggaatacaa |
24379467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 24380163 - 24380113
Alignment:
| Q |
107 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggca |
157 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||||||||||||||| |
|
|
| T |
24380163 |
tgttgggaaatgcctgcataatttccctcctctgtgaactcaaaataggca |
24380113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 190 - 256
Target Start/End: Original strand, 38994151 - 38994218
Alignment:
| Q |
190 |
aattttagcgtggaaaaccttctcaatgtgagtaa-ggaaaaaccacgggacccgtaagcctcttaaa |
256 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
38994151 |
aattttaacgtggaaaaccttctcaatgcgagaaagggaaaaaccacgggaccctcgagcctcttaaa |
38994218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 107 - 357
Target Start/End: Complemental strand, 41481815 - 41481548
Alignment:
| Q |
107 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
195 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
41481815 |
tgttgggaaatgcctgcataatttccctcctccgtgaactcaaaatagacact--agcggaaacgtgaaatataaacgtaatgacaca-aagagaatttt |
41481719 |
T |
|
| Q |
196 |
agcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atcttc |
291 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| | |||| |
|
|
| T |
41481718 |
agcgtggaaaaccttctcaatatgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaacttc |
41481619 |
T |
|
| Q |
292 |
accttcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
357 |
Q |
| |
|
||| | ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
41481618 |
acccttaggtggatctcactacaatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
41481548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 106 - 357
Target Start/End: Complemental strand, 36167814 - 36167547
Alignment:
| Q |
106 |
atgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaa-----------aatgacacacaacaaaattt |
194 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| || | ||||| |
|
|
| T |
36167814 |
atgttgggaaatgcctgcataatttccctcctccgtgaactcaaaataggcac--tagcggaaacgtgaaatataaacgtaatgacaca-aagagaattt |
36167718 |
T |
|
| Q |
195 |
tagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa-atctt |
290 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| ||||||||| |||||| | |||||||||| | ||||||||||| ||||||||||||||| | ||| |
|
|
| T |
36167717 |
tagcgtggaaaaccttctcaatatgagaaagggaaaaaaccac-ggacccttgggcctcttaaaacttccactataatgataatgggaatacaacaactt |
36167619 |
T |
|
| Q |
291 |
caccttcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
357 |
Q |
| |
|
|||| | ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
36167618 |
cacccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
36167547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 285
Target Start/End: Original strand, 18951129 - 18951309
Alignment:
| Q |
112 |
ggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat------gacacacaacaaaattttagcgtggaaa |
205 |
Q |
| |
|
||||||||| || |||||| |||||||||||||||||||||||||||| ||||||||| | |||| | | ||| ||||||||| |||||| |
|
|
| T |
18951129 |
ggaaatgcctgcataatttgcctcctccgtgaactcaaaataggcact--agcggaaacatgaaatataagcgtaatgacacagaattttagcatggaaa |
18951226 |
T |
|
| Q |
206 |
accttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
285 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| |||| | || ||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
18951227 |
accttctcaatgtgagaaagggaaaaaaccacgagacctttgggcttcttaaaacttccactataatgataatgggaatacaa |
18951309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 709
Target Start/End: Complemental strand, 12935084 - 12935055
Alignment:
| Q |
680 |
ccaacaattctccccctccagccaaaggga |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12935084 |
ccaacaattctccccctccagccaaaggga |
12935055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 106 - 285
Target Start/End: Complemental strand, 2937 - 2747
Alignment:
| Q |
106 |
atgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaattt |
194 |
Q |
| |
|
|||||||||||||| || |||||||||| ||||||||||||||||||| |||| ||||||||||| |||| |||||| || | ||||| |
|
|
| T |
2937 |
atgttgggaaatgcatgcataatttcccttctccgtgaactcaaaatagacact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaattt |
2841 |
T |
|
| Q |
195 |
tagcgtggaaaaccttctcaatgtgagtaagg--aaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
285 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
2840 |
tagcgtggaaaaccttctcaatgtgagaaagggaaaaaaccacgggacccttgggcctcttaaaacttccactataatgataatgggaatacaa |
2747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 721 - 819
Target Start/End: Complemental strand, 2274 - 2176
Alignment:
| Q |
721 |
gattagtttggggttgctgctatgcctgcagcctctttacaaaactctatcttctcttttgatagagcttttgtcatcatatctgctccattgtcattg |
819 |
Q |
| |
|
|||||||||||||||||||| | || ||||| | ||| |||||||| ||||||||||||| ||||| ||| |||||||| ||||||||||| |||||| |
|
|
| T |
2274 |
gattagtttggggttgctgccaatccagcagcttgtttgcaaaactcaatcttctcttttggtagaggtttggtcatcatgtctgctccattctcattg |
2176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 9e-26; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 107 - 357
Target Start/End: Original strand, 9757212 - 9757480
Alignment:
| Q |
107 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaat-----------gacacacaacaaaatttt |
195 |
Q |
| |
|
|||||| ||||||| || |||||||| |||||||||||||||||||||||||| ||||||||||| |||| |||||| || | |||||| |
|
|
| T |
9757212 |
tgttggtaaatgcctgcataatttccttcctccgtgaactcaaaataggcact--agcggaaacgtgaaatataagcgtaatgacaca-aagagaatttt |
9757308 |
T |
|
| Q |
196 |
agcgtggaaaaccttctcaatgtgagtaagg-aaaaaccacgggacccgtaagcctcttaaatc---tccactataataataatgggaatacaa-atctt |
290 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||| | |||||||||| ||||||||||| ||||||||||||||| | ||| |
|
|
| T |
9757309 |
agcgtggaaaaccttctcaatgtgagaaagggaaaaaccacgggacccttgggcctcttaaaaaacttccactataatgataatgggaatacaacaactt |
9757408 |
T |
|
| Q |
291 |
caccttcaggtggacctaac-----tatgtatctcaatttgtagatacaactctcacaaattggctcactat |
357 |
Q |
| |
|
|||| | ||||||| || || ||| | |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
9757409 |
cacccttaggtggatctcactataatatatctctcaatttgtaaggaacactctcacaaattggctcactat |
9757480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 37286972 - 37287069
Alignment:
| Q |
188 |
aaaattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
285 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
37286972 |
aaaattttagcatggaaaaccttctcaatgtgaaaaaggaaaaatcacgggacccttaagcatcttaaacttccactataataataataagaatacaa |
37287069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 190 - 285
Target Start/End: Original strand, 42682924 - 42683020
Alignment:
| Q |
190 |
aattttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
285 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||| |||||||||| | ||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
42682924 |
aatttcagcgtggaaaaccttctcaatgtgagaaaggaaaaatcacgggacccttggacctcttaaaacttccactataatgataatgggaatacaa |
42683020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 680 - 739
Target Start/End: Original strand, 25003452 - 25003511
Alignment:
| Q |
680 |
ccaacaattctccccctccagccaaagggaaactatccttagattagtttggggttgctg |
739 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||| | | |||||||||||||||||| |
|
|
| T |
25003452 |
ccaacaattctctccctccagccaaagggaaaatatcttcaaattagtttggggttgctg |
25003511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 679 - 709
Target Start/End: Complemental strand, 14178355 - 14178325
Alignment:
| Q |
679 |
accaacaattctccccctccagccaaaggga |
709 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14178355 |
accaacaattctccccctccagccaaaggga |
14178325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 709
Target Start/End: Original strand, 28607519 - 28607548
Alignment:
| Q |
680 |
ccaacaattctccccctccagccaaaggga |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28607519 |
ccaacaattctccccctccagccaaaggga |
28607548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 192 - 285
Target Start/End: Complemental strand, 37038035 - 37037942
Alignment:
| Q |
192 |
ttttagcgtggaaaaccttctcaatgtgagtaaggaaaaaccacgggacccgtaagcctcttaaatctccactataataataatgggaatacaa |
285 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| |||||||||||||| | |||||||||| | |||||||| |||||| |||||||| |
|
|
| T |
37038035 |
ttttagcgaggaaaaccttctcaatgtgagaaaggagaaaccacgggacccttgggcctcttaaactttcactataacgataatgagaatacaa |
37037942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 159
Target Start/End: Complemental strand, 37038108 - 37038074
Alignment:
| Q |
125 |
taatttccctcctccgtgaactcaaaataggcact |
159 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37038108 |
taatttctctcctccgtgaactcaaaataggcact |
37038074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 285
Target Start/End: Original strand, 342217 - 342404
Alignment:
| Q |
107 |
tgttgggaaatgccagcttaatttccctcctccgtgaactcaaaataggcactttagcggaaacgtaaaatgaca---------cacaacaaaattttag |
197 |
Q |
| |
|
|||||| ||||||| || |||||| |||||||||||||||||||||||||||| ||| ||||||| |||| | ||||| | |||||||| |
|
|
| T |
342217 |
tgttggaaaatgcctgcataattttcctcctccgtgaactcaaaataggcact--agcagaaacgtgaaatataagcgtaatgacacaa-agaattttag |
342313 |
T |
|
| Q |
198 |
cgtggaaaaccttctcaatgtgagtaa-ggaa-aaaccacgggacccgtaagcctcttaaatc-tccactataataataatgggaatacaa |
285 |
Q |
| |
|
|||| |||||||||||||| |||| || |||| ||||||||||| || | |||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
342314 |
cgtgaaaaaccttctcaatatgagaaatggaagaaaccacgggatccttgggcctcttaaaacttccactataatgataatgggaatacaa |
342404 |
T |
|
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