View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12701_low_11 (Length: 364)

Name: NF12701_low_11
Description: NF12701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12701_low_11
NF12701_low_11
[»] chr7 (6 HSPs)
chr7 (17-170)||(43119647-43119801)
chr7 (167-345)||(43119127-43119298)
chr7 (17-131)||(43119461-43119575)
chr7 (129-172)||(43119322-43119366)
chr7 (177-213)||(49013049-49013085)
chr7 (223-255)||(38177747-38177779)
[»] chr8 (1 HSPs)
chr8 (169-255)||(25105711-25105797)
[»] chr4 (3 HSPs)
chr4 (167-254)||(8019961-8020048)
chr4 (174-211)||(7593144-7593181)
chr4 (175-232)||(8019528-8019585)
[»] chr6 (2 HSPs)
chr6 (167-255)||(21917346-21917434)
chr6 (174-244)||(18239246-18239315)
[»] chr2 (6 HSPs)
chr2 (176-255)||(8442616-8442695)
chr2 (174-252)||(3960856-3960934)
chr2 (167-249)||(26674105-26674187)
chr2 (181-211)||(37940462-37940492)
chr2 (167-255)||(22311667-22311755)
chr2 (167-207)||(36168676-36168716)
[»] chr3 (2 HSPs)
chr3 (186-254)||(18391942-18392010)
chr3 (180-243)||(54697932-54697995)
[»] scaffold0236 (1 HSPs)
scaffold0236 (174-232)||(16928-16986)
[»] chr5 (1 HSPs)
chr5 (177-205)||(15069748-15069776)
[»] chr1 (2 HSPs)
chr1 (167-207)||(23998908-23998948)
chr1 (167-255)||(27580744-27580832)


Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 43119801 - 43119647
Alignment:
Q  17 gcagagagtgaaggagagttgaaagaagaggattcaggtctggtaggtgggcacgacgatcatcattcatcaatgttttattcacgagtgtagatcatct 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  43119801 gcagagagtgaaggagagttgaaagaagaggattcaggtctggtaggtgggcacgacgatcatcattcataaatgttttattcacgagtgtagatcattt 43119702  T
Q  117 ctattacttaataaaaatggcaatatcaattcttatag-tttcttgtgtataaat 170  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  43119701 ctattacttaataaaaatggcaatatcaattcttatagtttttttgtgtataaat 43119647  T

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Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 167 - 345
Target Start/End: Complemental strand, 43119298 - 43119127
Alignment:
Q  167 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactccttactcattc 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       |||    
T  43119298 aaatatatgcatttatatcatgtatttactacaaaactatagtaatgaatgttgccatttattttaaaaaatggagagaatctcaactcc-------ttc 43119206  T
Q  267 aaagaaataaaactcactactctcacaaataatccggccactcttcttcgcattcaatttcgttgttttcgtatacacc 345  Q
    ||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43119205 aaagaaataaaactcgctactctcagtaataatccggccactcttcttcgcattcaatttcgttgtttttgtatacacc 43119127  T

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Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 43119575 - 43119461
Alignment:
Q  17 gcagagagtgaaggagagttgaaagaagaggattcaggtctggtaggtgggcacgacgatcatcattcatcaatgttttattcacgagtgtagatcatct 116  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43119575 gcagagagtgaaggagagttgaaagaagaggatttaggtctggtaggtgggcacgaccatcatcattcatcaatgttttattcacgagtgtagatcatct 43119476  T
Q  117 ctattacttaataaa 131  Q
    |||||||||||||||    
T  43119475 ctattacttaataaa 43119461  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 43119366 - 43119322
Alignment:
Q  129 aaaaatggcaatatcaattcttatag-tttcttgtgtataaatat 172  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  43119366 aaaaatggcaatatcaattcttatagtttttttgtgtataaatat 43119322  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 49013049 - 49013085
Alignment:
Q  177 atttatatcatgtatttactacaaaactatagtaacg 213  Q
    ||||||||||||||||||||||| |||||||||||||    
T  49013049 atttatatcatgtatttactacataactatagtaacg 49013085  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 255
Target Start/End: Complemental strand, 38177779 - 38177747
Alignment:
Q  223 atttattttaaaaaatggagagaatctcaactc 255  Q
    ||||||||||| |||||||||||||||||||||    
T  38177779 atttattttaataaatggagagaatctcaactc 38177747  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 169 - 255
Target Start/End: Original strand, 25105711 - 25105797
Alignment:
Q  169 atatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactc 255  Q
    |||| |||||||||||  ||||||||||||||||||||||||| | ||||| |||||||||||| |||||||||| |||||||||||    
T  25105711 atatgtgcatttatatagtgtatttactacaaaactatagtaatggatgttaccatttattttagaaaatggagataatctcaactc 25105797  T

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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 8019961 - 8020048
Alignment:
Q  167 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaact 254  Q
    |||||| ||||||||||||||||||||||  |||||||||||||| |||  ||||||||||||||| ||||| ||||| |||||||||    
T  8019961 aaatatgtgcatttatatcatgtatttacatcaaaactatagtaatgaacattgccatttattttagaaaattgagaggatctcaact 8020048  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 7593144 - 7593181
Alignment:
Q  174 tgcatttatatcatgtatttactacaaaactatagtaa 211  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  7593144 tgcatttatatcatatatttacttcaaaactatagtaa 7593181  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 8019528 - 8019585
Alignment:
Q  175 gcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttatttta 232  Q
    ||||||| |||||||||||||  |||||||||||||| |||  |||||||||| ||||    
T  8019528 gcatttacatcatgtatttacatcaaaactatagtaatgaacattgccatttaattta 8019585  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 21917434 - 21917346
Alignment:
Q  167 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactc 255  Q
    |||||| || ||||||||||||||||||||||||||||||||||| | |   ||| ||||||||||| |||||||||  ||||||||||    
T  21917434 aaatatgtgtatttatatcatgtatttactacaaaactatagtaatggaaactgcaatttattttaagaaatggagaatatctcaactc 21917346  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 18239246 - 18239315
Alignment:
Q  174 tgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagag 244  Q
    ||||||||||| |||||||||| |||||| |||||||| | || ||| |||||||| || |||||||||||    
T  18239246 tgcatttatataatgtatttac-acaaaaatatagtaatggatattgtcatttattgtagaaaatggagag 18239315  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 8442695 - 8442616
Alignment:
Q  176 catttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactc 255  Q
    ||||||||||||||||||||||||||| |||||||| |||  ||||||||||||  || |||| |||||||||| |||||    
T  8442695 catttatatcatgtatttactacaaaattatagtaatgaaaattgccatttattcaaagaaattgagagaatctgaactc 8442616  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 252
Target Start/End: Original strand, 3960856 - 3960934
Alignment:
Q  174 tgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaa 252  Q
    |||||||||||||||||||||| ||||||||||||||| | |  ||  |||||||  || ||||||||||| |||||||    
T  3960856 tgcatttatatcatgtatttaccacaaaactatagtaatggacattatcatttatcgtagaaaatggagaggatctcaa 3960934  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 249
Target Start/End: Complemental strand, 26674187 - 26674105
Alignment:
Q  167 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatct 249  Q
    |||||| || |||||||||||||||||||| |||||| ||||||| | |   |  |||||||||||  |||||||||||||||    
T  26674187 aaatatgtgtatttatatcatgtatttactccaaaacgatagtaatggacactatcatttattttaggaaatggagagaatct 26674105  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 211
Target Start/End: Original strand, 37940462 - 37940492
Alignment:
Q  181 atatcatgtatttactacaaaactatagtaa 211  Q
    |||||||||||||||||||||||||||||||    
T  37940462 atatcatgtatttactacaaaactatagtaa 37940492  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 22311755 - 22311667
Alignment:
Q  167 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactc 255  Q
    |||||| |||||||||||||| |||||||   ||||||||||||| | |  |||| ||||||| ||  ||||| |||| ||||||||||    
T  22311755 aaatatgtgcatttatatcatttatttacacgaaaactatagtaatggacattgcaatttattgtagcaaatgaagaggatctcaactc 22311667  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 36168716 - 36168676
Alignment:
Q  167 aaatatatgcatttatatcatgtatttactacaaaactata 207  Q
    ||||||||||||||||||||| |||||| | ||||||||||    
T  36168716 aaatatatgcatttatatcatttatttattccaaaactata 36168676  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 18391942 - 18392010
Alignment:
Q  186 atgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaact 254  Q
    |||||||||||||||||||||||||| |  | |||||||||||| ||  ||||||||||||||||||||    
T  18391942 atgtatttactacaaaactatagtaatgggttttgccatttattataggaaatggagagaatctcaact 18392010  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 54697932 - 54697995
Alignment:
Q  180 tatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggaga 243  Q
    |||||||| ||||||||||||||||||||||||| || || | |||||| ||||||||| ||||    
T  54697932 tatatcatatatttactacaaaactatagtaacggatatttcaatttatcttaaaaaatagaga 54697995  T

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Target: scaffold0236 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 16986 - 16928
Alignment:
Q  174 tgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttatttta 232  Q
    ||||||||||| ||| ||||||||||||||||||  || |||  |||||||||||||||    
T  16986 tgcatttatatgatgcatttactacaaaactatacaaatgaacattgccatttatttta 16928  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 205
Target Start/End: Complemental strand, 15069776 - 15069748
Alignment:
Q  177 atttatatcatgtatttactacaaaacta 205  Q
    |||||||||||||||||||||||||||||    
T  15069776 atttatatcatgtatttactacaaaacta 15069748  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 23998948 - 23998908
Alignment:
Q  167 aaatatatgcatttatatcatgtatttactacaaaactata 207  Q
    |||||| ||||||||||| ||||||||||||||||| ||||    
T  23998948 aaatatgtgcatttatattatgtatttactacaaaattata 23998908  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 27580744 - 27580832
Alignment:
Q  167 aaatatatgcatttatatcatgtatttactacaaaactatagtaacgaatgttgccatttattttaaaaaatggagagaatctcaactc 255  Q
    |||||| || |||||||| ||||||||| ||||||| ||||||||   |  ||| ||||||||||| |||||  |||| ||||||||||    
T  27580744 aaatatgtgtatttatattatgtatttattacaaaattatagtaatagacattgtcatttattttagaaaataaagaggatctcaactc 27580832  T

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