View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12701_low_13 (Length: 345)
Name: NF12701_low_13
Description: NF12701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12701_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 32626905 - 32627227
Alignment:
| Q |
8 |
tagcaaaggctcagccaaagctctcatgcattgtgccacatagtatccatcatctccgaatgattcagattcaaaatcatcacgagcattccaattcact |
107 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32626905 |
tagcaaaggttcagccaaagctctcatgcattgtgccacattgtatccatcatctccgaatgattcagattcaaaatcatcacgagcattccaattcact |
32627004 |
T |
|
| Q |
108 |
tcagatatctcgagttgattcatgacaaatgatccttcagtaataacttccaatttcacttcagatggagatggataatatataggaatgttgaaagtat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32627005 |
tcagatatctcgagttgattcatgacaaatgatccttcagtaataacttccaatttcacttcagatggagatggataatatataggaatgttgaaagtat |
32627104 |
T |
|
| Q |
208 |
tgagtttctcttcttttgtgattccctacagtatacattgcataattcatattaatatcatcaaattaactcattttggcatgttc-aaaaaatatcatc |
306 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32627105 |
tgagtttctcttcttttatgattccctacagtatacattgcataattcatattaatatcatcaaattaactcattttggcatgttcaaaaaaatatcatc |
32627204 |
T |
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| Q |
307 |
aaattaacatttgaaatatttac |
329 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
32627205 |
aaattaacatttgaaatatttac |
32627227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 32708710 - 32708811
Alignment:
| Q |
134 |
aaatgatccttcagtaataacttccaatttcacttcagatggagatggataatatataggaatgttgaaagtattgagtttctcttcttttgtgattccc |
233 |
Q |
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|||||||||||| | | |||||||||||||||||| |||||||||||| ||| ||| ||||||||||||| || | |||||||||| || ||||| |
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| T |
32708710 |
aaatgatccttctttgagaacttccaatttcacttccgatggagatggagtgtattgagggatgttgaaagtatcaagctcctcttcttttatggttccc |
32708809 |
T |
|
| Q |
234 |
ta |
235 |
Q |
| |
|
|| |
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|
| T |
32708810 |
ta |
32708811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 82 - 274
Target Start/End: Original strand, 27736008 - 27736200
Alignment:
| Q |
82 |
aatcatcacgagcattccaattcacttcagatatctcgagttgattcatgacaaatgatccttcagtaataacttccaatttcacttcagatggagatgg |
181 |
Q |
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|||||||| ||||||||||||| |||||||| | ||| | || ||| |||||||||||||||||| | | ||||||||| |||||||||||||||||||| |
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| T |
27736008 |
aatcatcaagagcattccaattaacttcagaaacctccaatttattgatgacaaatgatccttcattgagaacttccaacttcacttcagatggagatgg |
27736107 |
T |
|
| Q |
182 |
ataatatataggaatgttgaaagtattgagtttctcttcttttgtgattccctacagtatacattgcataattcatattaatatcatcaaatt |
274 |
Q |
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| T |
27736108 |
ataataattagggatgttgaaagtattgattttctcttcgttaatgattccctgcagcatacattaaataattaatattaacatcattaaatt |
27736200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 27735910 - 27735965
Alignment:
| Q |
8 |
tagcaaaggctcagccaaagctctcatgcattgtgccacatagtatccatcatctc |
63 |
Q |
| |
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||||||||| ||||||| ||| || ||||||||||||| || |||||||||||||| |
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| T |
27735910 |
tagcaaaggttcagccacagccctaatgcattgtgccatattgtatccatcatctc |
27735965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 234
Target Start/End: Original strand, 21941865 - 21941966
Alignment:
| Q |
133 |
caaatgatccttcagtaataacttccaatttcacttcagatggagatggataatatataggaatgttgaaagtattgagtttctcttcttttgtgattcc |
232 |
Q |
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|||||||| ||||||| | |||||||| ||| | |||||||||||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
21941865 |
caaatgattcttcagttagaacttccacttttatttcagatggagatggaaaatagataggaatgttgaaagtattgagtttctcttcttctatgattcc |
21941964 |
T |
|
| Q |
233 |
ct |
234 |
Q |
| |
|
|| |
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|
| T |
21941965 |
ct |
21941966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 129 - 234
Target Start/End: Complemental strand, 20117989 - 20117884
Alignment:
| Q |
129 |
atgacaaatgatccttcagtaataacttccaatttcacttcagatggagatggataatatataggaatgttgaaagtattgagtttctcttcttttgtga |
228 |
Q |
| |
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||||||||||| |||||||| | |||||||||||||||||||| ||||||||||||||| |||| | |||||||||||||| ||||||||| | ||| |
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| T |
20117989 |
atgacaaatgacccttcagttagaacttccaatttcacttcagttggagatggataatagttagggagattgaaagtattgagggtctcttcttctatga |
20117890 |
T |
|
| Q |
229 |
ttccct |
234 |
Q |
| |
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|||||| |
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|
| T |
20117889 |
ttccct |
20117884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 5810728 - 5810812
Alignment:
| Q |
135 |
aatgatccttcagtaataacttccaatttcacttcagatggagatggataatatataggaatgttgaaagtattgagtttctctt |
219 |
Q |
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||||||||||| || | ||||||||| | || |||||||||||||||||||| |||| ||||||||| ||||||||||||||| |
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| T |
5810728 |
aatgatccttcggtgagaacttccaactcaacctcagatggagatggataatagttagggatgttgaaactattgagtttctctt |
5810812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 5810610 - 5810662
Alignment:
| Q |
8 |
tagcaaaggctcagccaaagctctcatgcattgtgccacatagtatccatcat |
60 |
Q |
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||||||||| ||||||| ||| || |||||||||||||||| ||||||||||| |
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| T |
5810610 |
tagcaaaggttcagccacagcccttatgcattgtgccacattgtatccatcat |
5810662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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