View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12701_low_18 (Length: 316)

Name: NF12701_low_18
Description: NF12701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12701_low_18
NF12701_low_18
[»] chr1 (1 HSPs)
chr1 (1-291)||(12919640-12919935)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 12919935 - 12919640
Alignment:
Q  1 gattttgcattgggaaagaaatggtaattactctgtgcgttcggcttaccattcgatacaagatgacaacagtagagagaaccctgaagcttcttctatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  12919935 gattttgcattgggaaagaaatggtaattactctgtgcgttcggcttaccattcgatacaagatgacaacagtagagagaaccctgaagcttcatctttg 12919836  T
Q  101 attgaccaaaggctttggagagcagtctggaaaatgcatgctccaaac-----tgtactagaaactttttgtggcgactggcccgcgacattctgccaac 195  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||      | |||||||||||||||||||||||||||||| |||||||||||||    
T  12919835 agtgaccaaaggctttggagagcagactggaaaatgcatgctccaaacaggctaggactagaaactttttgtggcgactggcccgcaacattctgccaac 12919736  T
Q  196 cagagggcgactggaacaaaaaggcgtgaatcttgatcctgtatgccttttatgcttctctgaaacagaaactactgaacaccttttcatgagatg 291  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12919735 cagaggccgactggaacaaaaaggcgtgattcttgatcctgtatgccctttatgcttctctgaaacagaaactactgaacaccttttaatgagatg 12919640  T

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