View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12701_low_2 (Length: 549)
Name: NF12701_low_2
Description: NF12701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12701_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 528
Target Start/End: Original strand, 40733243 - 40733749
Alignment:
| Q |
18 |
cgtatttgaacaacaaacttggttcaaaagattaaagtgttaagtagacttggatctcactctcaaaagttaactcaaataataagaatgtgagtacatg |
117 |
Q |
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| T |
40733243 |
cgtatttgaacaacaaacttggttcaaaagattaaagtgttaagtagacttgaatctcactctcaaaagttaactcaaataataagaatgtaagtacata |
40733342 |
T |
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| Q |
118 |
tatacatccatcattcagataatcatgtcaacgtggaacttcaatacaacttctatacacatcctcacgcccggcctgattcttgtgtctaattaccaca |
217 |
Q |
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| T |
40733343 |
tatacattcatcattcagataatcatgtcaacgtggaacttcaatacaacttctatacacatcctcacgcccagcctgattcttgtgtctaattaccaca |
40733442 |
T |
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| Q |
218 |
ctatcaattcttaattcgattttggtatcatgttaaacaagcatggatttaactctcaagagctagtttaaagaatgatgatgccaaatcacatatatac |
317 |
Q |
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| T |
40733443 |
ctatcaattcttaattcgattctggtatcatgttaaacaagcatggatttaactctcaagagctagtttaaagaatgatgatgccaaatcacatatatac |
40733542 |
T |
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| Q |
318 |
atgggaacccttactttaatataaagaaacaacaaatgcaaaagaacacacaatgattagtaacgaagttcagccaattttgcatatgtctgtgactcaa |
417 |
Q |
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| T |
40733543 |
atgggaacccttactttaatataaagaaacaacaaatgcaaaagaacaca----gattggtaacgaagatcagccaattttgcatatgtctgtgactcaa |
40733638 |
T |
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| Q |
418 |
agcaaccacaattcctttatattgtgatttcaaacttaaggtgacatcgtacaacttgtatatgagtctacaggcaagtttacaagatttccaattctac |
517 |
Q |
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| T |
40733639 |
agcgaccacaattcctttatattgtgatttcaaacttatggtgacatggtacaacttgtatatgatactacaatcaaatttacaagattaccaattctac |
40733738 |
T |
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| Q |
518 |
gtattaataat |
528 |
Q |
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| T |
40733739 |
gtattaataat |
40733749 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 400
Target Start/End: Original strand, 5508949 - 5508992
Alignment:
| Q |
357 |
aaaagaacacacaatgattagtaacgaagttcagccaattttgc |
400 |
Q |
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| T |
5508949 |
aaaagaacacacaatgcttggtaacgaaattcagccaattttgc |
5508992 |
T |
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