View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12701_low_21 (Length: 282)
Name: NF12701_low_21
Description: NF12701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12701_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 54012795 - 54013057
Alignment:
| Q |
1 |
aattacctgaacctgaacttaatgtttcgtgtaatgtccatgaatttttgttaagagtattgcctaatgcgtcaaagagaggcataaagaggcagaaatt |
100 |
Q |
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| T |
54012795 |
aattacctgaacctgaacttaatgtttcgtgtaatgtccatgaatttttgttaagagtattgcctaatgcgtcaaagagaggcataaagaggcagaaatt |
54012894 |
T |
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| Q |
101 |
ggtgtccttttcagtgtggtgaagattgtgatatctgcatagcatagaaaaagacatgaatcaatacacattggttggaccactatatagataaatgcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54012895 |
ggtgtccttttcagtgtggtgaagattgtgatatctgcatagcatagaaaaagacatgaatcaatacacattggttggaccactatatagataaatgcag |
54012994 |
T |
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| Q |
201 |
gctcatttctaatgattttcttctgtcttgccagttcaacacaaaaggatgaaaggtagataa |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54012995 |
gctcatttctaatgattttcttctgtcttgccagttcaacacaaaaggatgaaaggtagataa |
54013057 |
T |
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